1 sCache_like#1
34-132 aa · 99 aa · 21.9% of protein
Raw token
sCache_like:34:0.0000000124:132:105:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP56_RS12290
Histidine kinase, Classic
Anaerostipes hadrus · GCF_020538085
ClassHKTypeClassicLength452 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020538085#LIP56_RS12290Stable P2CS identifier used across views.
GenomeGCF_020538085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length452 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage279 / 452 aa (61.7%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa452 aa
Domain-by-domain annotation3 items
2 HisKA#2
226-292 aa · 67 aa · 14.8% of protein
Raw token
HisKA:226:4.85e-17:292:67:643 HATPase_c#3
336-448 aa · 113 aa · 25.0% of protein
Raw token
HATPase_c:336:1.3e-29:448:113:109- Raw architecture: sCache_like:34:0.0000000124:132:105:114#HisKA:226:4.85e-17:292:67:64#HATPase_c:336:1.3e-29:448:113:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020538085::NZ_JAJBNS010000026.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span191-2226Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP56_12290RefSeq proteinWP_226797240.1
Context group ID
GCF_020538085::NZ_JAJBNS010000026.1::G00017Context members
LIP56_RS12290LIP56_RS12295
Partner locus tags
LIP56_RS12290LIP56_RS12295
Partner old locus tags
LIP56_12290LIP56_12295
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226797240.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP56_RS12290Primary locus identifier stored in the genes table.
Old locus tagLIP56_12290Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNS010000026.1Sequence record reported by the local genomic context database.
Genomic interval191-1 549 nt1 359 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span191-2 226 ntGCF_020538085::NZ_JAJBNS010000026.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538085::NZ_JAJBNS010000026.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNS010000026.1All displayed genes belong to this local TCS context.
Neighborhood span191-2 226 nt2 036 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
191 nt2 226 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP56_RS12290GCF_020538085#LIP56_RS12290
HKClassicCurrent focus
191-1 549 nt · Reverse (-)
LIP56_RS12295GCF_020538085#LIP56_RS12295
RROmpR
1 546-2 226 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020538085#LIP56_RS12290The current gene is the representative for this cluster.
PFAM architecturesCache_like + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1943590
Simplified PFAM architecture for HKOC_1943590
PFAM domain coverage: 274 / 452 aa (60.6%)
1 aa452 aa
sCache_likeHisKAHATPase_c
- Simplified architecture: sCache_like + HisKA + HATPase_c
- Raw architecture: sCache_like[34-132] | HisKA[226-291] | HATPase_c[339-447]
- Domain count: 3
- Matched identifier: HKOC_1943590
- Positioned domains: sCache_like 34-132 ; HisKA 226-291 ; HATPase_c 339-447
Cluster members and taxonomy
Representative gene: GCF_020538085#LIP56_RS12290
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_020538085
AssemblyASM2053808v1 · Contighaploid
Genome composition2 942 796 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 54 · HK 26 · RR 25CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key