1 HisKA#1
151-214 aa · 64 aa · 17.0% of protein
Raw token
HisKA:151:0.0000000000116:214:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP56_RS10705
Histidine kinase, Classic
Anaerostipes hadrus · GCF_020538085
ClassHKTypeClassicLength377 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020538085#LIP56_RS10705Stable P2CS identifier used across views.
GenomeGCF_020538085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length377 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage176 / 377 aa (46.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa377 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
263-374 aa · 112 aa · 29.7% of protein
Raw token
HATPase_c:263:1.18e-24:374:113:109- Raw architecture: HisKA:151:0.0000000000116:214:64:64#HATPase_c:263:1.18e-24:374:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020538085::NZ_JAJBNS010000020.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3988-5812Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP56_10705RefSeq proteinWP_039862620.1
Context group ID
GCF_020538085::NZ_JAJBNS010000020.1::G00011Context members
LIP56_RS10705LIP56_RS10710
Partner locus tags
LIP56_RS10705LIP56_RS10710
Partner old locus tags
LIP56_10705LIP56_10710
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_039862620.1Primary protein accession used for annex mappings.
UniProt accessionA0A1Q2C5V9Primary UniProt accession resolved in the annex database.
UniProt IDA0A1Q2C5V9_ANAHADisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP56_RS10705Primary locus identifier stored in the genes table.
Old locus tagLIP56_10705Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNS010000020.1Sequence record reported by the local genomic context database.
Genomic interval3 988-5 121 nt1 134 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 988-5 812 ntGCF_020538085::NZ_JAJBNS010000020.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538085::NZ_JAJBNS010000020.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNS010000020.1All displayed genes belong to this local TCS context.
Neighborhood span3 988-5 812 nt1 825 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 988 nt5 812 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP56_RS10705GCF_020538085#LIP56_RS10705
HKClassicCurrent focus
3 988-5 121 nt · Reverse (-)
LIP56_RS10710GCF_020538085#LIP56_RS10710
RROmpR
5 111-5 812 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210695#CL2_RS10480Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2634124
Simplified PFAM architecture for HKOC_2634124
PFAM domain coverage: 174 / 377 aa (46.2%)
1 aa377 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[152-214] | HATPase_c[263-373]
- Domain count: 2
- Matched identifier: HKOC_2634124
- Positioned domains: HisKA 152-214 ; HATPase_c 263-373
Cluster members and taxonomy
Representative gene: GCF_000210695#CL2_RS10480
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_020538085
AssemblyASM2053808v1 · Contighaploid
Genome composition2 942 796 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 54 · HK 26 · RR 25CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key