1 HAMP#1
162-229 aa · 68 aa · 14.8% of protein
Raw token
HAMP:162:0.0000693:229:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP56_RS10620
Histidine kinase, Classic
Anaerostipes hadrus · GCF_020538085
ClassHKTypeClassicLength460 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020538085#LIP56_RS10620Stable P2CS identifier used across views.
GenomeGCF_020538085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length460 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 460 aa (53.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa460 aa
Domain-by-domain annotation3 items
2 HisKA#2
233-299 aa · 67 aa · 14.6% of protein
Raw token
HisKA:233:0.00000000000547:299:67:643 HATPase_c#3
347-457 aa · 111 aa · 24.1% of protein
Raw token
HATPase_c:347:1.32e-29:457:111:109- Raw architecture: HAMP:162:0.0000693:229:68:69#HisKA:233:0.00000000000547:299:67:64#HATPase_c:347:1.32e-29:457:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020538085::NZ_JAJBNS010000019.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span45601-47719Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP56_10620RefSeq proteinWP_008392899.1
Context group ID
GCF_020538085::NZ_JAJBNS010000019.1::G00009Context members
LIP56_RS10620LIP56_RS10625
Partner locus tags
LIP56_RS10620LIP56_RS10625
Partner old locus tags
LIP56_10620LIP56_10625
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008392899.1Primary protein accession used for annex mappings.
UniProt accessionA0A174RGG7Primary UniProt accession resolved in the annex database.
UniProt IDA0A174RGG7_ANAHADisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP56_RS10620Primary locus identifier stored in the genes table.
Old locus tagLIP56_10620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNS010000019.1Sequence record reported by the local genomic context database.
Genomic interval45 601-47 001 nt1 401 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span45 601-47 719 ntGCF_020538085::NZ_JAJBNS010000019.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538085::NZ_JAJBNS010000019.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNS010000019.1All displayed genes belong to this local TCS context.
Neighborhood span45 601-47 719 nt2 119 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 601 nt47 719 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP56_RS10620GCF_020538085#LIP56_RS10620
HKClassicCurrent focus
45 601-47 001 nt · Reverse (-)
LIP56_RS10625GCF_020538085#LIP56_RS10625
RROmpR
47 030-47 719 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210695#CL2_RS01900Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1833750
Simplified PFAM architecture for HKOC_1833750
PFAM domain coverage: 178 / 460 aa (38.7%)
1 aa460 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[233-299] | HATPase_c[347-457]
- Domain count: 2
- Matched identifier: HKOC_1833750
- Positioned domains: HisKA 233-299 ; HATPase_c 347-457
Cluster members and taxonomy
Representative gene: GCF_000210695#CL2_RS01900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_020538085
AssemblyASM2053808v1 · Contighaploid
Genome composition2 942 796 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 54 · HK 26 · RR 25CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key