1 Response_reg#1
4-116 aa · 113 aa · 50.9% of protein
Raw token
Response_reg:4:1.67e-35:116:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP56_RS09700
Response regulator NarL family
Anaerostipes hadrus · GCF_020538085
ClassRRTypeNarLLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020538085#LIP56_RS09700Stable P2CS identifier used across views.
GenomeGCF_020538085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 222 aa (74.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
158-210 aa · 53 aa · 23.9% of protein
Raw token
HTH_LUXR:158:7.87e-20:210:53:58- Raw architecture: Response_reg:4:1.67e-35:116:113:111#HTH_LUXR:158:7.87e-20:210:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020538085::NZ_JAJBNS010000016.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span53221-55208Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP56_09700RefSeq proteinWP_009265458.1
Context group ID
GCF_020538085::NZ_JAJBNS010000016.1::G00006Context members
LIP56_RS09695LIP56_RS09700
Partner locus tags
LIP56_RS09695LIP56_RS09700
Partner old locus tags
LIP56_09695LIP56_09700
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009265458.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP56_RS09700Primary locus identifier stored in the genes table.
Old locus tagLIP56_09700Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNS010000016.1Sequence record reported by the local genomic context database.
Genomic interval54 540-55 208 nt669 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span53 221-55 208 ntGCF_020538085::NZ_JAJBNS010000016.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538085::NZ_JAJBNS010000016.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNS010000016.1All displayed genes belong to this local TCS context.
Neighborhood span53 221-55 208 nt1 988 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 221 nt55 208 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP56_RS09695GCF_020538085#LIP56_RS09695
HKClassic
53 221-54 543 nt · Forward (+)
LIP56_RS09700GCF_020538085#LIP56_RS09700
RRNarLCurrent focus
54 540-55 208 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404955#ARA45_RS05710Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1641683
Simplified PFAM architecture for RROC_1641683
PFAM domain coverage: 167 / 222 aa (75.2%)
1 aa222 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[4-116] | GerE[157-210]
- Domain count: 2
- Matched identifier: RROC_1641683
- Positioned domains: Response_reg 4-116 ; Response_reg 4-116 ; GerE 157-210 ; GerE 157-210
Cluster members and taxonomy
Representative gene: GCF_001404955#ARA45_RS05710
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_020538085
AssemblyASM2053808v1 · Contighaploid
Genome composition2 942 796 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 54 · HK 26 · RR 25CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key