1 HAMP#1
191-263 aa · 73 aa · 15.0% of protein
Raw token
HAMP:191:0.00000000185:263:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP56_RS07890
Histidine kinase, Classic
Anaerostipes hadrus · GCF_020538085
ClassHKTypeClassicLength488 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020538085#LIP56_RS07890Stable P2CS identifier used across views.
GenomeGCF_020538085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length488 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage257 / 488 aa (52.7%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa488 aa
Domain-by-domain annotation3 items
2 His_kinase#2
279-355 aa · 77 aa · 15.8% of protein
Raw token
His_kinase:279:9.37e-36:355:77:803 HATPase_c#3
377-483 aa · 107 aa · 21.9% of protein
Raw token
HATPase_c:377:0.0000000000000601:483:108:109- Raw architecture: HAMP:191:0.00000000185:263:73:69#His_kinase:279:9.37e-36:355:77:80#HATPase_c:377:0.0000000000000601:483:108:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020538085::NZ_JAJBNS010000011.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span52854-55939Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP56_07890RefSeq proteinWP_044925052.1
Context group ID
GCF_020538085::NZ_JAJBNS010000011.1::G00005Context members
LIP56_RS07885LIP56_RS07890
Partner locus tags
LIP56_RS07885LIP56_RS07890
Partner old locus tags
LIP56_07885LIP56_07890
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_044925052.1Primary protein accession used for annex mappings.
UniProt accessionA0A174LCM8Primary UniProt accession resolved in the annex database.
UniProt IDA0A174LCM8_ANAHADisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP56_RS07890Primary locus identifier stored in the genes table.
Old locus tagLIP56_07890Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNS010000011.1Sequence record reported by the local genomic context database.
Genomic interval54 473-55 939 nt1 467 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span52 854-55 939 ntGCF_020538085::NZ_JAJBNS010000011.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538085::NZ_JAJBNS010000011.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNS010000011.1All displayed genes belong to this local TCS context.
Neighborhood span52 854-55 939 nt3 086 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
52 854 nt55 939 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP56_RS07885GCF_020538085#LIP56_RS07885
RRunclassified
52 854-54 473 nt · Forward (+)
LIP56_RS07890GCF_020538085#LIP56_RS07890
HKClassicCurrent focus
54 473-55 939 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000876135#TZ59_RS15530Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1550506
Simplified PFAM architecture for HKOC_1550506
PFAM domain coverage: 236 / 488 aa (48.4%)
1 aa488 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[211-262] | His_kinase[279-355] | HATPase_c[376-482]
- Domain count: 3
- Matched identifier: HKOC_1550506
- Positioned domains: HAMP 211-262 ; His_kinase 279-355 ; HATPase_c 376-482
Cluster members and taxonomy
Representative gene: GCF_000876135#TZ59_RS15530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_020538085
AssemblyASM2053808v1 · Contighaploid
Genome composition2 942 796 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 54 · HK 26 · RR 25CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key