1 GGDEF#1
198-345 aa · 148 aa · 14.1% of protein
Raw token
GGDEF:198:4.84e-22:345:157:160P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP56_RS07690
Histidine kinase, Hybrid
Anaerostipes hadrus · GCF_020538085
ClassHKTypeHybridLength1051 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020538085#LIP56_RS07690Stable P2CS identifier used across views.
GenomeGCF_020538085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
GGDEFHisKAHATPase_cResponse_reg
Protein length1051 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage447 / 1051 aa (42.5%)Merged over positioned domains only.
Domain description1 GGDEF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1051 aa
Domain-by-domain annotation4 items
2 HisKA#2
672-738 aa · 67 aa · 6.4% of protein
Raw token
HisKA:672:0.00000000000000156:738:67:643 HATPase_c#3
789-904 aa · 116 aa · 11.0% of protein
Raw token
HATPase_c:789:2.08e-28:904:117:1094 Response_reg#4
928-1043 aa · 116 aa · 11.0% of protein
Raw token
Response_reg:928:4.76e-29:1043:116:111- Raw architecture: GGDEF:198:4.84e-22:345:157:160#HisKA:672:0.00000000000000156:738:67:64#HATPase_c:789:2.08e-28:904:117:109#Response_reg:928:4.76e-29:1043:116:111
- Domain description: 1 GGDEF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020538085::NZ_JAJBNS010000011.1::G00004
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span16772-19927Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP56_07690RefSeq proteinWP_226797025.1
Context group ID
GCF_020538085::NZ_JAJBNS010000011.1::G00004Context members
LIP56_RS07690
Partner locus tags
LIP56_RS07690
Partner old locus tags
LIP56_07690
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226797025.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP56_RS07690Primary locus identifier stored in the genes table.
Old locus tagLIP56_07690Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNS010000011.1Sequence record reported by the local genomic context database.
Genomic interval16 772-19 927 nt3 156 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span16 772-19 927 ntGCF_020538085::NZ_JAJBNS010000011.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538085::NZ_JAJBNS010000011.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNS010000011.1All displayed genes belong to this local TCS context.
Neighborhood span16 772-19 927 nt3 156 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 772 nt19 927 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIP56_RS07690GCF_020538085#LIP56_RS07690
HKHybridCurrent focus
16 772-19 927 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020538085#LIP56_RS07690The current gene is the representative for this cluster.
PFAM architectureGGDEF + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0259009
Simplified PFAM architecture for HKOC_0259009
PFAM domain coverage: 446 / 1051 aa (42.4%)
1 aa1051 aa
GGDEFHisKAHATPase_cResponse_reg
- Simplified architecture: GGDEF + HisKA + HATPase_c + Response_reg
- Raw architecture: GGDEF[198-346] | HisKA[672-738] | HATPase_c[789-903] | Response_reg[928-1042]
- Domain count: 4
- Matched identifier: HKOC_0259009
- Positioned domains: GGDEF 198-346 ; HisKA 672-738 ; HATPase_c 789-903 ; Response_reg 928-1042
Cluster members and taxonomy
Representative gene: GCF_020538085#LIP56_RS07690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_020538085
AssemblyASM2053808v1 · Contighaploid
Genome composition2 942 796 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 54 · HK 26 · RR 25CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key