1 Response_reg#1
7-119 aa · 113 aa · 41.7% of protein
Raw token
Response_reg:7:0.00000000113:119:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP56_RS06160
Response regulator Spo0A family
Anaerostipes hadrus · GCF_020538085
ClassRRTypeSpo0ALength271 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_020538085#LIP56_RS06160Stable P2CS identifier used across views.
GenomeGCF_020538085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length271 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage217 / 271 aa (80.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa271 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
159-262 aa · 104 aa · 38.4% of protein
Raw token
Spo0A_C:159:1.12e-51:262:104:104- Raw architecture: Response_reg:7:0.00000000113:119:113:111#Spo0A_C:159:1.12e-51:262:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_020538085::NZ_JAJBNS010000008.1::G00027
Group size33 locus tags listed below.
HK / RR0 / 3Counts resolved for the local TCS neighborhood.
Context span42714-45261Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP56_06160RefSeq proteinWP_009265429.1
Context group ID
GCF_020538085::NZ_JAJBNS010000008.1::G00027Context members
LIP56_RS06160LIP56_RS06165LIP56_RS06170
Partner locus tags
LIP56_RS06160LIP56_RS06165LIP56_RS06170
Partner old locus tags
LIP56_06160LIP56_06165LIP56_06170
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009265429.1Primary protein accession used for annex mappings.
UniProt accessionA0A1Q2C3A1Primary UniProt accession resolved in the annex database.
UniProt IDA0A1Q2C3A1_ANAHADisplay identifier provided by UniProt.
GO / PubMed8 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP56_RS06160Primary locus identifier stored in the genes table.
Old locus tagLIP56_06160Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNS010000008.1Sequence record reported by the local genomic context database.
Genomic interval42 714-43 529 nt816 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span42 714-45 261 ntGCF_020538085::NZ_JAJBNS010000008.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538085::NZ_JAJBNS010000008.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNS010000008.1All displayed genes belong to this local TCS context.
Neighborhood span42 714-45 261 nt2 548 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
42 714 nt45 261 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
LIP56_RS06160GCF_020538085#LIP56_RS06160
RRSpo0ACurrent focus
42 714-43 529 nt · Reverse (-)
LIP56_RS06165GCF_020538085#LIP56_RS06165
RRSpo0A
43 595-44 434 nt · Reverse (-)
LIP56_RS06170GCF_020538085#LIP56_RS06170
RRSpo0A
44 455-45 261 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001998765#DO83_RS00250Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0612352
Simplified PFAM architecture for RROC_0612352
PFAM domain coverage: 214 / 271 aa (79.0%)
1 aa271 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[7-119] | Spo0A_C[160-260]
- Domain count: 2
- Matched identifier: RROC_0612352
- Positioned domains: Response_reg 7-119 ; Response_reg 7-119 ; Spo0A_C 160-260 ; Spo0A_C 160-260
Cluster members and taxonomy
Representative gene: GCF_001998765#DO83_RS00250
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_020538085
AssemblyASM2053808v1 · Contighaploid
Genome composition2 942 796 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 54 · HK 26 · RR 25CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key