1 HAMP#1
184-252 aa · 69 aa · 13.9% of protein
Raw token
HAMP:184:6.79e-16:252:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP56_RS05395
Histidine kinase, Classic
Anaerostipes hadrus · GCF_020538085
ClassHKTypeClassicLength495 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020538085#LIP56_RS05395Stable P2CS identifier used across views.
GenomeGCF_020538085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length495 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 495 aa (49.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa495 aa
Domain-by-domain annotation3 items
2 HisKA#2
263-330 aa · 68 aa · 13.7% of protein
Raw token
HisKA:263:7.37e-16:330:68:643 HATPase_c#3
377-485 aa · 109 aa · 22.0% of protein
Raw token
HATPase_c:377:5.94e-32:485:109:109- Raw architecture: HAMP:184:6.79e-16:252:69:69#HisKA:263:7.37e-16:330:68:64#HATPase_c:377:5.94e-32:485:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020538085::NZ_JAJBNS010000007.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4883-7061Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP56_05395RefSeq proteinWP_022091418.1
Context group ID
GCF_020538085::NZ_JAJBNS010000007.1::G00026Context members
LIP56_RS05395LIP56_RS05400
Partner locus tags
LIP56_RS05395LIP56_RS05400
Partner old locus tags
LIP56_05395LIP56_05400
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022091418.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP56_RS05395Primary locus identifier stored in the genes table.
Old locus tagLIP56_05395Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNS010000007.1Sequence record reported by the local genomic context database.
Genomic interval4 883-6 370 nt1 488 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 883-7 061 ntGCF_020538085::NZ_JAJBNS010000007.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538085::NZ_JAJBNS010000007.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNS010000007.1All displayed genes belong to this local TCS context.
Neighborhood span4 883-7 061 nt2 179 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 883 nt7 061 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP56_RS05395GCF_020538085#LIP56_RS05395
HKClassicCurrent focus
4 883-6 370 nt · Forward (+)
LIP56_RS05400GCF_020538085#LIP56_RS05400
RROmpR
6 372-7 061 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020538085#LIP56_RS05395The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1506854
Simplified PFAM architecture for HKOC_1506854
PFAM domain coverage: 228 / 495 aa (46.1%)
1 aa495 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[199-251] | HisKA[264-329] | HATPase_c[378-486]
- Domain count: 3
- Matched identifier: HKOC_1506854
- Positioned domains: HAMP 199-251 ; HisKA 264-329 ; HATPase_c 378-486
Cluster members and taxonomy
Representative gene: GCF_020538085#LIP56_RS05395
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_020538085
AssemblyASM2053808v1 · Contighaploid
Genome composition2 942 796 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 54 · HK 26 · RR 25CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key