1 HisKA#1
58-124 aa · 67 aa · 15.3% of protein
Raw token
HisKA:58:0.000000000000318:124:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP56_RS00300
Histidine kinase, Hybrid
Anaerostipes hadrus · GCF_020538085
ClassHKTypeHybridLength439 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020538085#LIP56_RS00300Stable P2CS identifier used across views.
GenomeGCF_020538085Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_cResponse_reg
Protein length439 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage303 / 439 aa (69.0%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa439 aa
Domain-by-domain annotation3 items
2 HATPase_c#2
171-288 aa · 118 aa · 26.9% of protein
Raw token
HATPase_c:171:5.67e-26:288:118:1093 Response_reg#3
312-429 aa · 118 aa · 26.9% of protein
Raw token
Response_reg:312:1.59e-30:429:118:111- Raw architecture: HisKA:58:0.000000000000318:124:67:64#HATPase_c:171:5.67e-26:288:118:109#Response_reg:312:1.59e-30:429:118:111
- Domain description: 1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020538085::NZ_JAJBNS010000001.1::G00002
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span53149-54468Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP56_00300RefSeq proteinWP_226796551.1
Context group ID
GCF_020538085::NZ_JAJBNS010000001.1::G00002Context members
LIP56_RS00300
Partner locus tags
LIP56_RS00300
Partner old locus tags
LIP56_00300
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226796551.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP56_RS00300Primary locus identifier stored in the genes table.
Old locus tagLIP56_00300Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNS010000001.1Sequence record reported by the local genomic context database.
Genomic interval53 149-54 468 nt1 320 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span53 149-54 468 ntGCF_020538085::NZ_JAJBNS010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020538085::NZ_JAJBNS010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNS010000001.1All displayed genes belong to this local TCS context.
Neighborhood span53 149-54 468 nt1 320 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
53 149 nt54 468 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIP56_RS00300GCF_020538085#LIP56_RS00300
HKHybridCurrent focus
53 149-54 468 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020538085#LIP56_RS00300The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2087257
Simplified PFAM architecture for HKOC_2087257
PFAM domain coverage: 300 / 439 aa (68.3%)
1 aa439 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[58-124] | HATPase_c[172-287] | Response_reg[312-428]
- Domain count: 3
- Matched identifier: HKOC_2087257
- Positioned domains: HisKA 58-124 ; HATPase_c 172-287 ; Response_reg 312-428
Cluster members and taxonomy
Representative gene: GCF_020538085#LIP56_RS00300
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_020538085
AssemblyASM2053808v1 · Contighaploid
Genome composition2 942 796 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 54 · HK 26 · RR 25CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key