1 Response_reg#1
4-104 aa · 101 aa · 40.9% of protein
Raw token
Response_reg:4:0.00000000129:104:104:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP99_RS16340
Response regulator LytTR family
Dorea formicigenerans · GCF_020537855
ClassRRTypeLytTRLength247 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020537855#LIP99_RS16340Stable P2CS identifier used across views.
GenomeGCF_020537855Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length247 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage182 / 247 aa (73.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa247 aa
Domain-by-domain annotation2 items
2 LytTR#2
156-236 aa · 81 aa · 32.8% of protein
Raw token
LytTR:156:0.000000000021:236:90:98- Raw architecture: Response_reg:4:0.00000000129:104:104:111#LytTR:156:0.000000000021:236:90:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020537855::NZ_JAJBNI010000006.1::G00046
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span27998-28741Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP99_02805RefSeq proteinWP_226850455.1
Context group ID
GCF_020537855::NZ_JAJBNI010000006.1::G00046Context members
LIP99_RS16340
Partner locus tags
LIP99_RS16340
Partner old locus tags
LIP99_02805
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226850455.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP99_RS16340Primary locus identifier stored in the genes table.
Old locus tagLIP99_02805Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNI010000006.1Sequence record reported by the local genomic context database.
Genomic interval27 998-28 741 nt744 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span27 998-28 741 ntGCF_020537855::NZ_JAJBNI010000006.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537855::NZ_JAJBNI010000006.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNI010000006.1All displayed genes belong to this local TCS context.
Neighborhood span27 998-28 741 nt744 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 998 nt28 741 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIP99_RS16340GCF_020537855#LIP99_RS16340
RRLytTRCurrent focus
27 998-28 741 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020537855#LIP99_RS16340The current gene is the representative for this cluster.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0762679
Simplified PFAM architecture for RROC_0762679
PFAM domain coverage: 181 / 247 aa (73.3%)
1 aa247 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-106] | LytTR[158-235]
- Domain count: 2
- Matched identifier: RROC_0762679
- Positioned domains: Response_reg 4-106 ; LytTR 158-235
Cluster members and taxonomy
Representative gene: GCF_020537855#LIP99_RS16340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_020537855
AssemblyASM2053785v1 · Contighaploid
Genome composition3 254 939 bp · 41,5% GCDorea formicigenerans
Signal transduction countsGenes 95 · HK 45 · RR 49CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key