1 HisKA#1
89-158 aa · 70 aa · 22.4% of protein
Raw token
HisKA:89:0.00000000652:158:70:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP99_RS00600
Histidine kinase, Classic
Dorea formicigenerans · GCF_020537855
ClassHKTypeClassicLength313 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537855#LIP99_RS00600Stable P2CS identifier used across views.
GenomeGCF_020537855Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length313 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage179 / 313 aa (57.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa313 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
204-312 aa · 109 aa · 34.8% of protein
Raw token
HATPase_c:204:5.52e-22:312:109:109- Raw architecture: HisKA:89:0.00000000652:158:70:64#HATPase_c:204:5.52e-22:312:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537855::NZ_JAJBNI010000002.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2708-4351Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP99_00600RefSeq proteinWP_226850145.1
Context group ID
GCF_020537855::NZ_JAJBNI010000002.1::G00014Context members
LIP99_RS00595LIP99_RS00600
Partner locus tags
LIP99_RS00595LIP99_RS00600
Partner old locus tags
LIP99_00595LIP99_00600
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226850145.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP99_RS00600Primary locus identifier stored in the genes table.
Old locus tagLIP99_00600Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNI010000002.1Sequence record reported by the local genomic context database.
Genomic interval3 410-4 351 nt942 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 708-4 351 ntGCF_020537855::NZ_JAJBNI010000002.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537855::NZ_JAJBNI010000002.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNI010000002.1All displayed genes belong to this local TCS context.
Neighborhood span2 708-4 351 nt1 644 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 708 nt4 351 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP99_RS00595GCF_020537855#LIP99_RS00595
RROmpR
2 708-3 373 nt · Forward (+)
LIP99_RS00600GCF_020537855#LIP99_RS00600
HKClassicCurrent focus
3 410-4 351 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020537855#LIP99_RS00600The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2875412
Simplified PFAM architecture for HKOC_2875412
PFAM domain coverage: 177 / 313 aa (56.5%)
1 aa313 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[89-157] | HATPase_c[204-311]
- Domain count: 2
- Matched identifier: HKOC_2875412
- Positioned domains: HisKA 89-157 ; HATPase_c 204-311
Cluster members and taxonomy
Representative gene: GCF_020537855#LIP99_RS00600
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_020537855
AssemblyASM2053785v1 · Contighaploid
Genome composition3 254 939 bp · 41,5% GCDorea formicigenerans
Signal transduction countsGenes 95 · HK 45 · RR 49CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key