1 Response_reg#1
3-112 aa · 110 aa · 21.8% of protein
Raw token
Response_reg:3:2.48e-31:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP99_RS14620
Response regulator, unclassified
Dorea formicigenerans · GCF_020537855
ClassRRTypeunclassifiedLength505 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020537855#LIP99_RS14620Stable P2CS identifier used across views.
GenomeGCF_020537855Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length505 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage186 / 505 aa (36.8%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa505 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
412-453 aa · 42 aa · 8.3% of protein
Raw token
HTH_AraC:412:0.0000102:453:42:423 HTH_AraC#3
469-502 aa · 34 aa · 6.7% of protein
Raw token
HTH_AraC:469:0.00000000141:502:34:42- Raw architecture: Response_reg:3:2.48e-31:112:110:111#HTH_AraC:412:0.0000102:453:42:42#HTH_AraC:469:0.00000000141:502:34:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020537855::NZ_JAJBNI010000068.1::G00051
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span157-1674Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP99_14620RefSeq proteinWP_226851709.1
Context group ID
GCF_020537855::NZ_JAJBNI010000068.1::G00051Context members
LIP99_RS14620
Partner locus tags
LIP99_RS14620
Partner old locus tags
LIP99_14620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226851709.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP99_RS14620Primary locus identifier stored in the genes table.
Old locus tagLIP99_14620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNI010000068.1Sequence record reported by the local genomic context database.
Genomic interval157-1 674 nt1 518 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span157-1 674 ntGCF_020537855::NZ_JAJBNI010000068.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537855::NZ_JAJBNI010000068.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNI010000068.1All displayed genes belong to this local TCS context.
Neighborhood span157-1 674 nt1 518 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
157 nt1 674 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIP99_RS14620GCF_020537855#LIP99_RS14620
RRunclassifiedCurrent focus
157-1 674 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020537855#LIP99_RS14620The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0152997
Simplified PFAM architecture for RROC_0152997
PFAM domain coverage: 188 / 505 aa (37.2%)
1 aa505 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-112] | HTH_18[426-503]
- Domain count: 2
- Matched identifier: RROC_0152997
- Positioned domains: Response_reg 3-112 ; HTH_18 426-503
Cluster members and taxonomy
Representative gene: GCF_020537855#LIP99_RS14620
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_020537855
AssemblyASM2053785v1 · Contighaploid
Genome composition3 254 939 bp · 41,5% GCDorea formicigenerans
Signal transduction countsGenes 95 · HK 45 · RR 49CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key