1 Response_reg#1
37-105 aa · 69 aa · 55.6% of protein
Raw token
Response_reg:37:0.00000000000000106:105:70:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP99_RS13905
Response regulator, CheY family
Dorea formicigenerans · GCF_020537855
ClassRRTypeCheYLength124 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020537855#LIP99_RS13905Stable P2CS identifier used across views.
GenomeGCF_020537855Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length124 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage69 / 124 aa (55.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa124 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:37:0.00000000000000106:105:70:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020537855::NZ_JAJBNI010000059.1::G00045
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1470-1844Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP99_13905RefSeq proteinWP_226851649.1
Context group ID
GCF_020537855::NZ_JAJBNI010000059.1::G00045Context members
LIP99_RS13905
Partner locus tags
LIP99_RS13905
Partner old locus tags
LIP99_13905
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226851649.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP99_RS13905Primary locus identifier stored in the genes table.
Old locus tagLIP99_13905Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNI010000059.1Sequence record reported by the local genomic context database.
Genomic interval1 470-1 844 nt375 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 470-1 844 ntGCF_020537855::NZ_JAJBNI010000059.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537855::NZ_JAJBNI010000059.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNI010000059.1All displayed genes belong to this local TCS context.
Neighborhood span1 470-1 844 nt375 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 470 nt1 844 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIP99_RS13905GCF_020537855#LIP99_RS13905
RRCheYCurrent focus
1 470-1 844 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020537855#LIP99_RS13905The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2387051
Simplified PFAM architecture for RROC_2387051
PFAM domain coverage: 69 / 124 aa (55.6%)
1 aa124 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[37-105]
- Domain count: 1
- Matched identifier: RROC_2387051
- Positioned domains: Response_reg 37-105
Cluster members and taxonomy
Representative gene: GCF_020537855#LIP99_RS13905
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_020537855
AssemblyASM2053785v1 · Contighaploid
Genome composition3 254 939 bp · 41,5% GCDorea formicigenerans
Signal transduction countsGenes 95 · HK 45 · RR 49CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key