1 Response_reg#1
8-106 aa · 99 aa · 27.9% of protein
Raw token
Response_reg:8:5.75e-20:106:103:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP99_RS12195
Response regulator, CheB family
Dorea formicigenerans · GCF_020537855
ClassRRTypeCheBLength355 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020537855#LIP99_RS12195Stable P2CS identifier used across views.
GenomeGCF_020537855Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regCheB_methylest
Protein length355 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage279 / 355 aa (78.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 CheB_methylestSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa355 aa
Domain-by-domain annotation2 items
2 CheB_methylest#2
168-347 aa · 180 aa · 50.7% of protein
Raw token
CheB_methylest:168:7.33e-79:347:181:177- Raw architecture: Response_reg:8:5.75e-20:106:103:111#CheB_methylest:168:7.33e-79:347:181:177
- Domain description: 1 Response_reg,1 CheB_methylest
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020537855::NZ_JAJBNI010000044.1::G00039
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span20458-21525Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP99_12195RefSeq proteinWP_226851506.1
Context group ID
GCF_020537855::NZ_JAJBNI010000044.1::G00039Context members
LIP99_RS12195
Partner locus tags
LIP99_RS12195
Partner old locus tags
LIP99_12195
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226851506.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP99_RS12195Primary locus identifier stored in the genes table.
Old locus tagLIP99_12195Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNI010000044.1Sequence record reported by the local genomic context database.
Genomic interval20 458-21 525 nt1 068 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span20 458-21 525 ntGCF_020537855::NZ_JAJBNI010000044.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537855::NZ_JAJBNI010000044.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNI010000044.1All displayed genes belong to this local TCS context.
Neighborhood span20 458-21 525 nt1 068 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 458 nt21 525 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIP99_RS12195GCF_020537855#LIP99_RS12195
RRCheBCurrent focus
20 458-21 525 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020537855#LIP99_RS12195The current gene is the representative for this cluster.
PFAM architectureResponse_reg + CheB_methylest2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0469979
Simplified PFAM architecture for RROC_0469979
PFAM domain coverage: 277 / 355 aa (78.0%)
1 aa355 aa
Response_regCheB_methylest
- Simplified architecture: Response_reg + CheB_methylest
- Raw architecture: Response_reg[8-106] | CheB_methylest[168-345]
- Domain count: 2
- Matched identifier: RROC_0469979
- Positioned domains: Response_reg 8-106 ; CheB_methylest 168-345
Cluster members and taxonomy
Representative gene: GCF_020537855#LIP99_RS12195
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_020537855
AssemblyASM2053785v1 · Contighaploid
Genome composition3 254 939 bp · 41,5% GCDorea formicigenerans
Signal transduction countsGenes 95 · HK 45 · RR 49CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key