1 Response_reg#1
36-145 aa · 110 aa · 42.1% of protein
Raw token
Response_reg:36:1.16e-24:145:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP99_RS11030
Response regulator OmpR family
Dorea formicigenerans · GCF_020537855
ClassRRTypeOmpRLength261 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537855#LIP99_RS11030Stable P2CS identifier used across views.
GenomeGCF_020537855Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length261 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 261 aa (72.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa261 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
181-258 aa · 78 aa · 29.9% of protein
Raw token
Trans_reg_C:181:1.01e-27:258:78:77- Raw architecture: Response_reg:36:1.16e-24:145:112:111#Trans_reg_C:181:1.01e-27:258:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537855::NZ_JAJBNI010000037.1::G00035
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9755-11473Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP99_11030RefSeq proteinWP_226851416.1
Context group ID
GCF_020537855::NZ_JAJBNI010000037.1::G00035Context members
LIP99_RS11030LIP99_RS11035
Partner locus tags
LIP99_RS11030LIP99_RS11035
Partner old locus tags
LIP99_11030LIP99_11035
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_226851416.1Primary protein accession used for annex mappings.
UniProt accessionA0ABT2SCW7Primary UniProt accession resolved in the annex database.
UniProt IDA0ABT2SCW7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP99_RS11030Primary locus identifier stored in the genes table.
Old locus tagLIP99_11030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNI010000037.1Sequence record reported by the local genomic context database.
Genomic interval9 755-10 540 nt786 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span9 755-11 473 ntGCF_020537855::NZ_JAJBNI010000037.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537855::NZ_JAJBNI010000037.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNI010000037.1All displayed genes belong to this local TCS context.
Neighborhood span9 755-11 473 nt1 719 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 755 nt11 473 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP99_RS11030GCF_020537855#LIP99_RS11030
RROmpRCurrent focus
9 755-10 540 nt · Forward (+)
LIP99_RS11035GCF_020537855#LIP99_RS11035
HKClassic
10 541-11 473 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000209935#EUR_RS01875Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0648495
Simplified PFAM architecture for RROC_0648495
PFAM domain coverage: 186 / 261 aa (71.3%)
1 aa261 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[36-145] | Trans_reg_C[183-258]
- Domain count: 2
- Matched identifier: RROC_0648495
- Positioned domains: Response_reg 36-145 ; Response_reg 36-145 ; Trans_reg_C 183-258 ; Trans_reg_C 183-258
Cluster members and taxonomy
Representative gene: GCF_000209935#EUR_RS01875
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_020537855
AssemblyASM2053785v1 · Contighaploid
Genome composition3 254 939 bp · 41,5% GCDorea formicigenerans
Signal transduction countsGenes 95 · HK 45 · RR 49CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key