1 Response_reg#1
8-120 aa · 113 aa · 12.0% of protein
Raw token
Response_reg:8:5.64e-24:120:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP99_RS10445
Response regulator, PleD_VieA family
Dorea formicigenerans · GCF_020537855
ClassRRTypePleD_VieALength938 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020537855#LIP99_RS10445Stable P2CS identifier used across views.
GenomeGCF_020537855Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regGGDEFEAL
Protein length938 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage441 / 938 aa (47.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 GGDEF,1 EALSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa938 aa
Domain-by-domain annotation3 items
2 GGDEF#2
522-612 aa · 91 aa · 9.7% of protein
Raw token
GGDEF:522:0.00000000000105:612:96:1603 EAL#3
689-925 aa · 237 aa · 25.3% of protein
Raw token
EAL:689:1.09e-74:925:241:235- Raw architecture: Response_reg:8:5.64e-24:120:114:111#GGDEF:522:0.00000000000105:612:96:160#EAL:689:1.09e-74:925:241:235
- Domain description: 1 Response_reg,1 GGDEF,1 EAL
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020537855::NZ_JAJBNI010000034.1::G00033
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span24257-27073Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP99_10445RefSeq proteinWP_226851354.1
Context group ID
GCF_020537855::NZ_JAJBNI010000034.1::G00033Context members
LIP99_RS10445
Partner locus tags
LIP99_RS10445
Partner old locus tags
LIP99_10445
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226851354.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP99_RS10445Primary locus identifier stored in the genes table.
Old locus tagLIP99_10445Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNI010000034.1Sequence record reported by the local genomic context database.
Genomic interval24 257-27 073 nt2 817 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span24 257-27 073 ntGCF_020537855::NZ_JAJBNI010000034.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537855::NZ_JAJBNI010000034.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNI010000034.1All displayed genes belong to this local TCS context.
Neighborhood span24 257-27 073 nt2 817 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
24 257 nt27 073 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIP99_RS10445GCF_020537855#LIP99_RS10445
RRPleD_VieACurrent focus
24 257-27 073 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020537855#LIP99_RS10445The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF + EAL3 domains in the representative PFAM annotation.
PFAM architecture for RROC_0010621
Simplified PFAM architecture for RROC_0010621
PFAM domain coverage: 483 / 938 aa (51.5%)
1 aa938 aa
Response_regGGDEFEAL
- Simplified architecture: Response_reg + GGDEF + EAL
- Raw architecture: Response_reg[8-120] | GGDEF[522-656] | EAL[691-925]
- Domain count: 3
- Matched identifier: RROC_0010621
- Positioned domains: Response_reg 8-120 ; GGDEF 522-656 ; EAL 691-925
Cluster members and taxonomy
Representative gene: GCF_020537855#LIP99_RS10445
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_020537855
AssemblyASM2053785v1 · Contighaploid
Genome composition3 254 939 bp · 41,5% GCDorea formicigenerans
Signal transduction countsGenes 95 · HK 45 · RR 49CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key