1 Response_reg#1
4-110 aa · 107 aa · 46.3% of protein
Raw token
Response_reg:4:9.53e-39:110:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP99_RS09250
Response regulator OmpR family
Dorea formicigenerans · GCF_020537855
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537855#LIP99_RS09250Stable P2CS identifier used across views.
GenomeGCF_020537855Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 231 aa (80.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-230 aa · 78 aa · 33.8% of protein
Raw token
Trans_reg_C:153:1.6e-28:230:78:77- Raw architecture: Response_reg:4:9.53e-39:110:109:111#Trans_reg_C:153:1.6e-28:230:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537855::NZ_JAJBNI010000028.1::G00030
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span36810-38808Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP99_09250RefSeq proteinWP_028086107.1
Context group ID
GCF_020537855::NZ_JAJBNI010000028.1::G00030Context members
LIP99_RS09250LIP99_RS09255
Partner locus tags
LIP99_RS09250LIP99_RS09255
Partner old locus tags
LIP99_09250LIP99_09255
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_028086107.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP99_RS09250Primary locus identifier stored in the genes table.
Old locus tagLIP99_09250Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNI010000028.1Sequence record reported by the local genomic context database.
Genomic interval36 810-37 505 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span36 810-38 808 ntGCF_020537855::NZ_JAJBNI010000028.1::G00030
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537855::NZ_JAJBNI010000028.1::G00030Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNI010000028.1All displayed genes belong to this local TCS context.
Neighborhood span36 810-38 808 nt1 999 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
36 810 nt38 808 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP99_RS09250GCF_020537855#LIP99_RS09250
RROmpRCurrent focus
36 810-37 505 nt · Forward (+)
LIP99_RS09255GCF_020537855#LIP99_RS09255
HKClassic
37 498-38 808 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424345#G617_RS0102355Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1159975
Simplified PFAM architecture for RROC_1159975
PFAM domain coverage: 185 / 231 aa (80.1%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-111] | Trans_reg_C[154-230]
- Domain count: 2
- Matched identifier: RROC_1159975
- Positioned domains: Response_reg 4-111 ; Response_reg 4-111 ; Trans_reg_C 154-230 ; Trans_reg_C 154-230
Cluster members and taxonomy
Representative gene: GCF_000424345#G617_RS0102355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_020537855
AssemblyASM2053785v1 · Contighaploid
Genome composition3 254 939 bp · 41,5% GCDorea formicigenerans
Signal transduction countsGenes 95 · HK 45 · RR 49CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key