1 HAMP#1
172-241 aa · 70 aa · 14.9% of protein
Raw token
HAMP:172:0.0000000000014:241:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP99_RS08915
Histidine kinase, Classic
Dorea formicigenerans · GCF_020537855
ClassHKTypeClassicLength470 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537855#LIP99_RS08915Stable P2CS identifier used across views.
GenomeGCF_020537855Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length470 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage242 / 470 aa (51.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa470 aa
Domain-by-domain annotation3 items
2 HisKA#2
246-305 aa · 60 aa · 12.8% of protein
Raw token
HisKA:246:4.73e-16:305:60:643 HATPase_c#3
357-468 aa · 112 aa · 23.8% of protein
Raw token
HATPase_c:357:5.67e-31:468:112:109- Raw architecture: HAMP:172:0.0000000000014:241:70:69#HisKA:246:4.73e-16:305:60:64#HATPase_c:357:5.67e-31:468:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537855::NZ_JAJBNI010000027.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span18857-20986Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP99_08915RefSeq proteinWP_226851247.1
Context group ID
GCF_020537855::NZ_JAJBNI010000027.1::G00023Context members
LIP99_RS08910LIP99_RS08915
Partner locus tags
LIP99_RS08910LIP99_RS08915
Partner old locus tags
LIP99_08910LIP99_08915
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226851247.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP99_RS08915Primary locus identifier stored in the genes table.
Old locus tagLIP99_08915Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNI010000027.1Sequence record reported by the local genomic context database.
Genomic interval19 574-20 986 nt1 413 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span18 857-20 986 ntGCF_020537855::NZ_JAJBNI010000027.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537855::NZ_JAJBNI010000027.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNI010000027.1All displayed genes belong to this local TCS context.
Neighborhood span18 857-20 986 nt2 130 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 857 nt20 986 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP99_RS08910GCF_020537855#LIP99_RS08910
RROmpR
18 857-19 558 nt · Forward (+)
LIP99_RS08915GCF_020537855#LIP99_RS08915
HKClassicCurrent focus
19 574-20 986 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020537855#LIP99_RS08915The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1721771
Simplified PFAM architecture for HKOC_1721771
PFAM domain coverage: 221 / 470 aa (47.0%)
1 aa470 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[196-241] | HisKA[246-309] | HATPase_c[358-468]
- Domain count: 3
- Matched identifier: HKOC_1721771
- Positioned domains: HAMP 196-241 ; HisKA 246-309 ; HATPase_c 358-468
Cluster members and taxonomy
Representative gene: GCF_020537855#LIP99_RS08915
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_020537855
AssemblyASM2053785v1 · Contighaploid
Genome composition3 254 939 bp · 41,5% GCDorea formicigenerans
Signal transduction countsGenes 95 · HK 45 · RR 49CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key