1 HAMP#1
94-161 aa · 68 aa · 17.3% of protein
Raw token
HAMP:94:0.00000000168:161:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP99_RS06030
Histidine kinase, Classic
Dorea formicigenerans · GCF_020537855
ClassHKTypeClassicLength392 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537855#LIP99_RS06030Stable P2CS identifier used across views.
GenomeGCF_020537855Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length392 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage237 / 392 aa (60.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa392 aa
Domain-by-domain annotation3 items
2 HisKA#2
179-241 aa · 63 aa · 16.1% of protein
Raw token
HisKA:179:0.000000549:241:63:643 HATPase_c#3
287-392 aa · 106 aa · 27.0% of protein
Raw token
HATPase_c:287:3.24e-20:392:108:109- Raw architecture: HAMP:94:0.00000000168:161:68:69#HisKA:179:0.000000549:241:63:64#HATPase_c:287:3.24e-20:392:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537855::NZ_JAJBNI010000016.1::G00012
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17196-19036Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP99_06030RefSeq proteinWP_226850911.1
Context group ID
GCF_020537855::NZ_JAJBNI010000016.1::G00012Context members
LIP99_RS06025LIP99_RS06030
Partner locus tags
LIP99_RS06025LIP99_RS06030
Partner old locus tags
LIP99_06025LIP99_06030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226850911.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP99_RS06030Primary locus identifier stored in the genes table.
Old locus tagLIP99_06030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNI010000016.1Sequence record reported by the local genomic context database.
Genomic interval17 858-19 036 nt1 179 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span17 196-19 036 ntGCF_020537855::NZ_JAJBNI010000016.1::G00012
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537855::NZ_JAJBNI010000016.1::G00012Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNI010000016.1All displayed genes belong to this local TCS context.
Neighborhood span17 196-19 036 nt1 841 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 196 nt19 036 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP99_RS06025GCF_020537855#LIP99_RS06025
RROmpR
17 196-17 870 nt · Forward (+)
LIP99_RS06030GCF_020537855#LIP99_RS06030
HKClassicCurrent focus
17 858-19 036 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020537855#LIP99_RS06030The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2514496
Simplified PFAM architecture for HKOC_2514496
PFAM domain coverage: 213 / 392 aa (54.3%)
1 aa392 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[114-159] | HisKA[179-241] | HATPase_c[287-390]
- Domain count: 3
- Matched identifier: HKOC_2514496
- Positioned domains: HAMP 114-159 ; HisKA 179-241 ; HATPase_c 287-390
Cluster members and taxonomy
Representative gene: GCF_020537855#LIP99_RS06030
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_020537855
AssemblyASM2053785v1 · Contighaploid
Genome composition3 254 939 bp · 41,5% GCDorea formicigenerans
Signal transduction countsGenes 95 · HK 45 · RR 49CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key