1 Response_reg#1
8-116 aa · 109 aa · 20.6% of protein
Raw token
Response_reg:8:1.52e-27:116:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP99_RS05050
Response regulator, unclassified
Dorea formicigenerans · GCF_020537855
ClassRRTypeunclassifiedLength530 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537855#LIP99_RS05050Stable P2CS identifier used across views.
GenomeGCF_020537855Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length530 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage183 / 530 aa (34.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa530 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
434-475 aa · 42 aa · 7.9% of protein
Raw token
HTH_AraC:434:0.000000705:475:42:423 HTH_AraC#3
493-524 aa · 32 aa · 6.0% of protein
Raw token
HTH_AraC:493:0.000000512:524:32:42- Raw architecture: Response_reg:8:1.52e-27:116:109:111#HTH_AraC:434:0.000000705:475:42:42#HTH_AraC:493:0.000000512:524:32:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537855::NZ_JAJBNI010000013.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span18277-21644Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP99_05050RefSeq proteinWP_226850790.1
Context group ID
GCF_020537855::NZ_JAJBNI010000013.1::G00006Context members
LIP99_RS05050LIP99_RS05055
Partner locus tags
LIP99_RS05050LIP99_RS05055
Partner old locus tags
LIP99_05050LIP99_05055
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226850790.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP99_RS05050Primary locus identifier stored in the genes table.
Old locus tagLIP99_05050Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNI010000013.1Sequence record reported by the local genomic context database.
Genomic interval18 277-19 869 nt1 593 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span18 277-21 644 ntGCF_020537855::NZ_JAJBNI010000013.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537855::NZ_JAJBNI010000013.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNI010000013.1All displayed genes belong to this local TCS context.
Neighborhood span18 277-21 644 nt3 368 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 277 nt21 644 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP99_RS05050GCF_020537855#LIP99_RS05050
RRunclassifiedCurrent focus
18 277-19 869 nt · Forward (+)
LIP99_RS05055GCF_020537855#LIP99_RS05055
HKClassic
19 866-21 644 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020537855#LIP99_RS05050The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0112071
Simplified PFAM architecture for RROC_0112071
PFAM domain coverage: 236 / 530 aa (44.5%)
1 aa530 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[7-117] | GGDEF_2[241-287] | HTH_18[449-526]
- Domain count: 3
- Matched identifier: RROC_0112071
- Positioned domains: Response_reg 7-117 ; GGDEF_2 241-287 ; HTH_18 449-526
Cluster members and taxonomy
Representative gene: GCF_020537855#LIP99_RS05050
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_020537855
AssemblyASM2053785v1 · Contighaploid
Genome composition3 254 939 bp · 41,5% GCDorea formicigenerans
Signal transduction countsGenes 95 · HK 45 · RR 49CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key