1 PilJ#1
30-120 aa · 91 aa · 8.7% of protein
Raw token
PilJ:30:0.00000649:120:102:112P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP99_RS00795
Histidine kinase, Hybrid
Dorea formicigenerans · GCF_020537855
ClassHKTypeHybridLength1051 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020537855#LIP99_RS00795Stable P2CS identifier used across views.
GenomeGCF_020537855Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
PilJGGDEFHisKAHATPase_cResponse_reg
Protein length1051 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage541 / 1051 aa (51.5%)Merged over positioned domains only.
Domain description1 PilJ,1 GGDEF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1051 aa
Domain-by-domain annotation5 items
2 GGDEF#2
194-344 aa · 151 aa · 14.4% of protein
Raw token
GGDEF:194:6.2e-23:344:157:1603 HisKA#3
675-740 aa · 66 aa · 6.3% of protein
Raw token
HisKA:675:0.00000000000000169:740:66:644 HATPase_c#4
787-901 aa · 115 aa · 10.9% of protein
Raw token
HATPase_c:787:1.8e-27:901:116:1095 Response_reg#5
929-1046 aa · 118 aa · 11.2% of protein
Raw token
Response_reg:929:9.91e-27:1046:118:111- Raw architecture: PilJ:30:0.00000649:120:102:112#GGDEF:194:6.2e-23:344:157:160#HisKA:675:0.00000000000000169:740:66:64#HATPase_c:787:1.8e-27:901:116:109#Response_reg:929:9.91e-27:1046:118:111
- Domain description: 1 PilJ,1 GGDEF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020537855::NZ_JAJBNI010000002.1::G00015
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span48090-51245Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP99_00795RefSeq proteinWP_226850182.1
Context group ID
GCF_020537855::NZ_JAJBNI010000002.1::G00015Context members
LIP99_RS00795
Partner locus tags
LIP99_RS00795
Partner old locus tags
LIP99_00795
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226850182.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP99_RS00795Primary locus identifier stored in the genes table.
Old locus tagLIP99_00795Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNI010000002.1Sequence record reported by the local genomic context database.
Genomic interval48 090-51 245 nt3 156 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span48 090-51 245 ntGCF_020537855::NZ_JAJBNI010000002.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537855::NZ_JAJBNI010000002.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNI010000002.1All displayed genes belong to this local TCS context.
Neighborhood span48 090-51 245 nt3 156 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
48 090 nt51 245 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIP99_RS00795GCF_020537855#LIP99_RS00795
HKHybridCurrent focus
48 090-51 245 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020537855#LIP99_RS00795The current gene is the representative for this cluster.
PFAM architectureGGDEF + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0259007
Simplified PFAM architecture for HKOC_0259007
PFAM domain coverage: 451 / 1051 aa (42.9%)
1 aa1051 aa
GGDEFHisKAHATPase_cResponse_reg
- Simplified architecture: GGDEF + HisKA + HATPase_c + Response_reg
- Raw architecture: GGDEF[195-345] | HisKA[675-740] | HATPase_c[787-903] | Response_reg[929-1045]
- Domain count: 4
- Matched identifier: HKOC_0259007
- Positioned domains: GGDEF 195-345 ; HisKA 675-740 ; HATPase_c 787-903 ; Response_reg 929-1045
Cluster members and taxonomy
Representative gene: GCF_020537855#LIP99_RS00795
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_020537855
AssemblyASM2053785v1 · Contighaploid
Genome composition3 254 939 bp · 41,5% GCDorea formicigenerans
Signal transduction countsGenes 95 · HK 45 · RR 49CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key