1 HisKA#1
121-174 aa · 54 aa · 15.9% of protein
Raw token
HisKA:121:0.0000162:174:60:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP99_RS00110
Histidine kinase, Classic
Dorea formicigenerans · GCF_020537855
ClassHKTypeClassicLength339 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537855#LIP99_RS00110Stable P2CS identifier used across views.
GenomeGCF_020537855Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length339 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 339 aa (49.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa339 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
219-332 aa · 114 aa · 33.6% of protein
Raw token
HATPase_c:219:3.18e-22:332:114:109- Raw architecture: HisKA:121:0.0000162:174:60:64#HATPase_c:219:3.18e-22:332:114:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537855::NZ_JAJBNI010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span21651-23353Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP99_00110RefSeq proteinWP_173792385.1
Context group ID
GCF_020537855::NZ_JAJBNI010000001.1::G00001Context members
LIP99_RS00105LIP99_RS00110
Partner locus tags
LIP99_RS00105LIP99_RS00110
Partner old locus tags
LIP99_00105LIP99_00110
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173792385.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP99_RS00110Primary locus identifier stored in the genes table.
Old locus tagLIP99_00110Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNI010000001.1Sequence record reported by the local genomic context database.
Genomic interval22 334-23 353 nt1 020 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span21 651-23 353 ntGCF_020537855::NZ_JAJBNI010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537855::NZ_JAJBNI010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNI010000001.1All displayed genes belong to this local TCS context.
Neighborhood span21 651-23 353 nt1 703 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 651 nt23 353 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP99_RS00105GCF_020537855#LIP99_RS00105
RROmpR
21 651-22 337 nt · Forward (+)
LIP99_RS00110GCF_020537855#LIP99_RS00110
HKClassicCurrent focus
22 334-23 353 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300365#G4352_RS07715Use this link to inspect the representative gene detail.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2840644
Simplified PFAM architecture for HKOC_2840644
PFAM domain coverage: 113 / 339 aa (33.3%)
1 aa339 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[220-332]
- Domain count: 1
- Matched identifier: HKOC_2840644
- Positioned domains: HATPase_c 220-332
Cluster members and taxonomy
Representative gene: GCF_013300365#G4352_RS07715
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_020537855
AssemblyASM2053785v1 · Contighaploid
Genome composition3 254 939 bp · 41,5% GCDorea formicigenerans
Signal transduction countsGenes 95 · HK 45 · RR 49CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key