1 Response_reg#1
3-113 aa · 111 aa · 48.7% of protein
Raw token
Response_reg:3:9.03e-28:113:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP99_RS00105
Response regulator OmpR family
Dorea formicigenerans · GCF_020537855
ClassRRTypeOmpRLength228 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537855#LIP99_RS00105Stable P2CS identifier used across views.
GenomeGCF_020537855Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length228 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 228 aa (82.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa228 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-228 aa · 76 aa · 33.3% of protein
Raw token
Trans_reg_C:153:2.03e-24:228:77:77- Raw architecture: Response_reg:3:9.03e-28:113:112:111#Trans_reg_C:153:2.03e-24:228:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537855::NZ_JAJBNI010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span21651-23353Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP99_00105RefSeq proteinWP_138376307.1
Context group ID
GCF_020537855::NZ_JAJBNI010000001.1::G00001Context members
LIP99_RS00105LIP99_RS00110
Partner locus tags
LIP99_RS00105LIP99_RS00110
Partner old locus tags
LIP99_00105LIP99_00110
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_138376307.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP99_RS00105Primary locus identifier stored in the genes table.
Old locus tagLIP99_00105Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBNI010000001.1Sequence record reported by the local genomic context database.
Genomic interval21 651-22 337 nt687 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span21 651-23 353 ntGCF_020537855::NZ_JAJBNI010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537855::NZ_JAJBNI010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBNI010000001.1All displayed genes belong to this local TCS context.
Neighborhood span21 651-23 353 nt1 703 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 651 nt23 353 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP99_RS00105GCF_020537855#LIP99_RS00105
RROmpRCurrent focus
21 651-22 337 nt · Forward (+)
LIP99_RS00110GCF_020537855#LIP99_RS00110
HKClassic
22 334-23 353 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_005844655#FGQ78_RS07840Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1317666
Simplified PFAM architecture for RROC_1317666
PFAM domain coverage: 187 / 228 aa (82.0%)
1 aa228 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-113] | Trans_reg_C[153-228]
- Domain count: 2
- Matched identifier: RROC_1317666
- Positioned domains: Response_reg 3-113 ; Response_reg 3-113 ; Trans_reg_C 153-228 ; Trans_reg_C 153-228
Cluster members and taxonomy
Representative gene: GCF_005844655#FGQ78_RS07840
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 486 · GCF_020537855
AssemblyASM2053785v1 · Contighaploid
Genome composition3 254 939 bp · 41,5% GCDorea formicigenerans
Signal transduction countsGenes 95 · HK 45 · RR 49CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key