1 HAMP#1
50-120 aa · 71 aa · 21.1% of protein
Raw token
HAMP:50:0.00000000000699:120:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP68_RS16055
Histidine kinase, Classic
Anaerostipes hadrus · GCF_020537395
ClassHKTypeClassicLength336 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537395#LIP68_RS16055Stable P2CS identifier used across views.
GenomeGCF_020537395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length336 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage238 / 336 aa (70.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa336 aa
Domain-by-domain annotation3 items
2 HisKA#2
127-189 aa · 63 aa · 18.8% of protein
Raw token
HisKA:127:1.72e-16:189:63:643 HATPase_c#3
233-336 aa · 104 aa · 31.0% of protein
Raw token
HATPase_c:233:1.83e-26:336:104:109- Raw architecture: HAMP:50:0.00000000000699:120:71:69#HisKA:127:1.72e-16:189:63:64#HATPase_c:233:1.83e-26:336:104:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537395::NZ_JAJBMG010000098.1::G00036
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span23-1740Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP68_16060RefSeq proteinWP_226816250.1
Context group ID
GCF_020537395::NZ_JAJBMG010000098.1::G00036Context members
LIP68_RS16050LIP68_RS16055
Partner locus tags
LIP68_RS16050LIP68_RS16055
Partner old locus tags
LIP68_16055LIP68_16060
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226816250.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP68_RS16055Primary locus identifier stored in the genes table.
Old locus tagLIP68_16060Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBMG010000098.1Sequence record reported by the local genomic context database.
Genomic interval733-1 740 nt1 008 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span23-1 740 ntGCF_020537395::NZ_JAJBMG010000098.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537395::NZ_JAJBMG010000098.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBMG010000098.1All displayed genes belong to this local TCS context.
Neighborhood span23-1 740 nt1 718 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
23 nt1 740 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP68_RS16050GCF_020537395#LIP68_RS16050
RROmpR
23-733 nt · Forward (+)
LIP68_RS16055GCF_020537395#LIP68_RS16055
HKClassicCurrent focus
733-1 740 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435045#DWX31_RS09810Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2811485
Simplified PFAM architecture for HKOC_2811485
PFAM domain coverage: 222 / 347 aa (64.0%)
1 aa347 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[70-120] | HisKA[126-188] | HATPase_c[235-342]
- Domain count: 3
- Matched identifier: HKOC_2811485
- Positioned domains: HAMP 70-120 ; HisKA 126-188 ; HATPase_c 235-342
Cluster members and taxonomy
Representative gene: GCF_003435045#DWX31_RS09810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_020537395
AssemblyASM2053739v1 · Contighaploid
Genome composition3 343 178 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 65 · HK 32 · RR 32CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key