1 HisKA#1
190-251 aa · 62 aa · 15.2% of protein
Raw token
HisKA:190:0.00000000000926:251:63:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP68_RS03400
Histidine kinase, Classic
Anaerostipes hadrus · GCF_020537395
ClassHKTypeClassicLength407 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537395#LIP68_RS03400Stable P2CS identifier used across views.
GenomeGCF_020537395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length407 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage172 / 407 aa (42.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa407 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
297-406 aa · 110 aa · 27.0% of protein
Raw token
HATPase_c:297:5.9e-24:406:110:109- Raw architecture: HisKA:190:0.00000000000926:251:63:64#HATPase_c:297:5.9e-24:406:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537395::NZ_JAJBMG010000006.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span61925-63819Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP68_03400RefSeq proteinWP_173750986.1
Context group ID
GCF_020537395::NZ_JAJBMG010000006.1::G00026Context members
LIP68_RS03400LIP68_RS03405
Partner locus tags
LIP68_RS03400LIP68_RS03405
Partner old locus tags
LIP68_03400LIP68_03405
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173750986.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP68_RS03400Primary locus identifier stored in the genes table.
Old locus tagLIP68_03400Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBMG010000006.1Sequence record reported by the local genomic context database.
Genomic interval61 925-63 148 nt1 224 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span61 925-63 819 ntGCF_020537395::NZ_JAJBMG010000006.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537395::NZ_JAJBMG010000006.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBMG010000006.1All displayed genes belong to this local TCS context.
Neighborhood span61 925-63 819 nt1 895 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
61 925 nt63 819 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP68_RS03400GCF_020537395#LIP68_RS03400
HKClassicCurrent focus
61 925-63 148 nt · Reverse (-)
LIP68_RS03405GCF_020537395#LIP68_RS03405
RROmpR
63 145-63 819 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302845#G4942_RS08200Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2382224
Simplified PFAM architecture for HKOC_2382224
PFAM domain coverage: 169 / 407 aa (41.5%)
1 aa407 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[191-251] | HATPase_c[297-404]
- Domain count: 2
- Matched identifier: HKOC_2382224
- Positioned domains: HisKA 191-251 ; HATPase_c 297-404
Cluster members and taxonomy
Representative gene: GCF_013302845#G4942_RS08200
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_020537395
AssemblyASM2053739v1 · Contighaploid
Genome composition3 343 178 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 65 · HK 32 · RR 32CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key