1 HisKA#1
89-144 aa · 56 aa · 19.0% of protein
Raw token
HisKA:89:0.0000000000144:144:56:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP68_RS15670
Histidine kinase, Classic
Anaerostipes hadrus · GCF_020537395
ClassHKTypeClassicLength295 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020537395#LIP68_RS15670Stable P2CS identifier used across views.
GenomeGCF_020537395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length295 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage142 / 295 aa (48.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa295 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
196-281 aa · 86 aa · 29.2% of protein
Raw token
HATPase_c:196:0.00000000000000248:281:91:109- Raw architecture: HisKA:89:0.0000000000144:144:56:64#HATPase_c:196:0.00000000000000248:281:91:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020537395::NZ_JAJBMG010000075.1::G00033
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span2835-3725Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP68_15675RefSeq proteinWP_416763204.1
Context group ID
GCF_020537395::NZ_JAJBMG010000075.1::G00033Context members
LIP68_RS15670
Partner locus tags
LIP68_RS15670
Partner old locus tags
LIP68_15675
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_416763204.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP68_RS15670Primary locus identifier stored in the genes table.
Old locus tagLIP68_15675Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBMG010000075.1Sequence record reported by the local genomic context database.
Genomic interval2 835-3 725 nt891 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 835-3 725 ntGCF_020537395::NZ_JAJBMG010000075.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537395::NZ_JAJBMG010000075.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBMG010000075.1All displayed genes belong to this local TCS context.
Neighborhood span2 835-3 725 nt891 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 835 nt3 725 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIP68_RS15670GCF_020537395#LIP68_RS15670
HKClassicCurrent focus
2 835-3 725 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013301605#G4434_RS17615Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2892392
Simplified PFAM architecture for HKOC_2892392
PFAM domain coverage: 143 / 295 aa (48.5%)
1 aa295 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[87-144] | HATPase_c[196-280]
- Domain count: 2
- Matched identifier: HKOC_2892392
- Positioned domains: HisKA 87-144 ; HATPase_c 196-280
Cluster members and taxonomy
Representative gene: GCF_013301605#G4434_RS17615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_020537395
AssemblyASM2053739v1 · Contighaploid
Genome composition3 343 178 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 65 · HK 32 · RR 32CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key