1 HAMP#1
173-240 aa · 68 aa · 13.8% of protein
Raw token
HAMP:173:6.17e-16:240:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP68_RS14115
Histidine kinase, Classic
Anaerostipes hadrus · GCF_020537395
ClassHKTypeClassicLength494 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537395#LIP68_RS14115Stable P2CS identifier used across views.
GenomeGCF_020537395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length494 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 494 aa (49.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa494 aa
Domain-by-domain annotation3 items
2 HisKA#2
266-333 aa · 68 aa · 13.8% of protein
Raw token
HisKA:266:0.00000000000000185:333:68:643 HATPase_c#3
377-485 aa · 109 aa · 22.1% of protein
Raw token
HATPase_c:377:1.43e-16:485:112:109- Raw architecture: HAMP:173:6.17e-16:240:68:69#HisKA:266:0.00000000000000185:333:68:64#HATPase_c:377:1.43e-16:485:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537395::NZ_JAJBMG010000049.1::G00021
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4081-6242Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP68_14120RefSeq proteinWP_040343928.1
Context group ID
GCF_020537395::NZ_JAJBMG010000049.1::G00021Context members
LIP68_RS14110LIP68_RS14115
Partner locus tags
LIP68_RS14110LIP68_RS14115
Partner old locus tags
LIP68_14115LIP68_14120
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_040343928.1Primary protein accession used for annex mappings.
UniProt accessionA0A173UNN9Primary UniProt accession resolved in the annex database.
UniProt IDA0A173UNN9_ANAHADisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP68_RS14115Primary locus identifier stored in the genes table.
Old locus tagLIP68_14120Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBMG010000049.1Sequence record reported by the local genomic context database.
Genomic interval4 758-6 242 nt1 485 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 081-6 242 ntGCF_020537395::NZ_JAJBMG010000049.1::G00021
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537395::NZ_JAJBMG010000049.1::G00021Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBMG010000049.1All displayed genes belong to this local TCS context.
Neighborhood span4 081-6 242 nt2 162 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 081 nt6 242 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP68_RS14110GCF_020537395#LIP68_RS14110
RROmpR
4 081-4 761 nt · Forward (+)
LIP68_RS14115GCF_020537395#LIP68_RS14115
HKClassicCurrent focus
4 758-6 242 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000332875#HMPREF0369_RS02185Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1509714
Simplified PFAM architecture for HKOC_1509714
PFAM domain coverage: 224 / 494 aa (45.3%)
1 aa494 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[190-240] | HisKA[266-331] | HATPase_c[378-484]
- Domain count: 3
- Matched identifier: HKOC_1509714
- Positioned domains: HAMP 190-240 ; HisKA 266-331 ; HATPase_c 378-484
Cluster members and taxonomy
Representative gene: GCF_000332875#HMPREF0369_RS02185
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_020537395
AssemblyASM2053739v1 · Contighaploid
Genome composition3 343 178 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 65 · HK 32 · RR 32CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key