1 HAMP#1
191-263 aa · 73 aa · 15.0% of protein
Raw token
HAMP:191:0.00000000197:263:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP68_RS12710
Histidine kinase, Classic
Anaerostipes hadrus · GCF_020537395
ClassHKTypeClassicLength488 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537395#LIP68_RS12710Stable P2CS identifier used across views.
GenomeGCF_020537395Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length488 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage257 / 488 aa (52.7%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa488 aa
Domain-by-domain annotation3 items
2 His_kinase#2
279-355 aa · 77 aa · 15.8% of protein
Raw token
His_kinase:279:9.43e-36:355:77:803 HATPase_c#3
377-483 aa · 107 aa · 21.9% of protein
Raw token
HATPase_c:377:0.0000000000000566:483:108:109- Raw architecture: HAMP:191:0.00000000197:263:73:69#His_kinase:279:9.43e-36:355:77:80#HATPase_c:377:0.0000000000000566:483:108:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537395::NZ_JAJBMG010000038.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span16897-19982Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP68_12715RefSeq proteinWP_118352320.1
Context group ID
GCF_020537395::NZ_JAJBMG010000038.1::G00018Context members
LIP68_RS12705LIP68_RS12710
Partner locus tags
LIP68_RS12705LIP68_RS12710
Partner old locus tags
LIP68_12710LIP68_12715
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118352320.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP68_RS12710Primary locus identifier stored in the genes table.
Old locus tagLIP68_12715Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBMG010000038.1Sequence record reported by the local genomic context database.
Genomic interval18 516-19 982 nt1 467 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span16 897-19 982 ntGCF_020537395::NZ_JAJBMG010000038.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537395::NZ_JAJBMG010000038.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBMG010000038.1All displayed genes belong to this local TCS context.
Neighborhood span16 897-19 982 nt3 086 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
16 897 nt19 982 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP68_RS12705GCF_020537395#LIP68_RS12705
RRunclassified
16 897-18 516 nt · Forward (+)
LIP68_RS12710GCF_020537395#LIP68_RS12710
HKClassicCurrent focus
18 516-19 982 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302845#G4942_RS13080Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1552727
Simplified PFAM architecture for HKOC_1552727
PFAM domain coverage: 236 / 488 aa (48.4%)
1 aa488 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[211-262] | His_kinase[279-355] | HATPase_c[376-482]
- Domain count: 3
- Matched identifier: HKOC_1552727
- Positioned domains: HAMP 211-262 ; His_kinase 279-355 ; HATPase_c 376-482
Cluster members and taxonomy
Representative gene: GCF_013302845#G4942_RS13080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_020537395
AssemblyASM2053739v1 · Contighaploid
Genome composition3 343 178 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 65 · HK 32 · RR 32CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key