1 Response_reg#1
6-118 aa · 113 aa · 55.7% of protein
Raw token
Response_reg:6:1.43e-32:118:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP74_RS09735
Response regulator NarL family
Anaerostipes hadrus · GCF_020537325
ClassRRTypeNarLLength203 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537325#LIP74_RS09735Stable P2CS identifier used across views.
GenomeGCF_020537325Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length203 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage167 / 203 aa (82.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa203 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
143-196 aa · 54 aa · 26.6% of protein
Raw token
HTH_LUXR:143:0.00000000000465:196:54:58- Raw architecture: Response_reg:6:1.43e-32:118:114:111#HTH_LUXR:143:0.00000000000465:196:54:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537325::NZ_JAJBMH010000021.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15479-18501Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP74_09720RefSeq proteinWP_015530845.1
Context group ID
GCF_020537325::NZ_JAJBMH010000021.1::G00008Context members
LIP74_RS09730LIP74_RS09735
Partner locus tags
LIP74_RS09730LIP74_RS09735
Partner old locus tags
LIP74_09715LIP74_09720
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_015530845.1Primary protein accession used for annex mappings.
UniProt accessionD4MW89Primary UniProt accession resolved in the annex database.
UniProt IDD4MW89_ANAHADisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP74_RS09735Primary locus identifier stored in the genes table.
Old locus tagLIP74_09720Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBMH010000021.1Sequence record reported by the local genomic context database.
Genomic interval17 890-18 501 nt612 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span15 479-18 501 ntGCF_020537325::NZ_JAJBMH010000021.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537325::NZ_JAJBMH010000021.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBMH010000021.1All displayed genes belong to this local TCS context.
Neighborhood span15 479-18 501 nt3 023 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 479 nt18 501 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP74_RS09730GCF_020537325#LIP74_RS09730
HKUnorthodox
15 479-17 893 nt · Forward (+)
LIP74_RS09735GCF_020537325#LIP74_RS09735
RRNarLCurrent focus
17 890-18 501 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210695#CL2_RS13910Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2107774
Simplified PFAM architecture for RROC_2107774
PFAM domain coverage: 164 / 203 aa (80.8%)
1 aa203 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-117] | GerE[145-196]
- Domain count: 2
- Matched identifier: RROC_2107774
- Positioned domains: Response_reg 6-117 ; Response_reg 6-117 ; GerE 145-196 ; GerE 145-196
Cluster members and taxonomy
Representative gene: GCF_000210695#CL2_RS13910
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_020537325
AssemblyASM2053732v1 · Contighaploid
Genome composition3 242 192 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 54 · HK 28 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key