1 Response_reg#1
6-115 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:6:3e-16:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP74_RS01030
Response regulator LytTR family
Anaerostipes hadrus · GCF_020537325
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020537325#LIP74_RS01030Stable P2CS identifier used across views.
GenomeGCF_020537325Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage201 / 237 aa (84.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-229 aa · 91 aa · 38.4% of protein
Raw token
LytTR:139:1.07e-19:229:97:98- Raw architecture: Response_reg:6:3e-16:115:112:111#LytTR:139:1.07e-19:229:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020537325::NZ_JAJBMH010000002.1::G00004
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span46431-47144Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP74_01030RefSeq proteinWP_006426966.1
Context group ID
GCF_020537325::NZ_JAJBMH010000002.1::G00004Context members
LIP74_RS01030
Partner locus tags
LIP74_RS01030
Partner old locus tags
LIP74_01030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_006426966.1Primary protein accession used for annex mappings.
UniProt accessionA6BGA2Primary UniProt accession resolved in the annex database.
UniProt IDA6BGA2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP74_RS01030Primary locus identifier stored in the genes table.
Old locus tagLIP74_01030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBMH010000002.1Sequence record reported by the local genomic context database.
Genomic interval46 431-47 144 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span46 431-47 144 ntGCF_020537325::NZ_JAJBMH010000002.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537325::NZ_JAJBMH010000002.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBMH010000002.1All displayed genes belong to this local TCS context.
Neighborhood span46 431-47 144 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
46 431 nt47 144 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIP74_RS01030GCF_020537325#LIP74_RS01030
RRLytTRCurrent focus
46 431-47 144 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154065#DORLON_RS04265Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0961593
Simplified PFAM architecture for RROC_0961593
PFAM domain coverage: 203 / 237 aa (85.7%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[6-118] | LytTR[140-229]
- Domain count: 2
- Matched identifier: RROC_0961593
- Positioned domains: Response_reg 6-118 ; Response_reg 6-118 ; LytTR 140-229 ; LytTR 140-229
Cluster members and taxonomy
Representative gene: GCF_000154065#DORLON_RS04265
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_020537325
AssemblyASM2053732v1 · Contighaploid
Genome composition3 242 192 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 54 · HK 28 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key