1 Response_reg#1
7-120 aa · 114 aa · 41.9% of protein
Raw token
Response_reg:7:0.000000000152:120:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP74_RS08685
Response regulator Spo0A family
Anaerostipes hadrus · GCF_020537325
ClassRRTypeSpo0ALength272 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_020537325#LIP74_RS08685Stable P2CS identifier used across views.
GenomeGCF_020537325Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length272 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage218 / 272 aa (80.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa272 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
160-263 aa · 104 aa · 38.2% of protein
Raw token
Spo0A_C:160:2.66e-62:263:104:104- Raw architecture: Response_reg:7:0.000000000152:120:115:111#Spo0A_C:160:2.66e-62:263:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_020537325::NZ_JAJBMH010000018.1::G00002
Group size33 locus tags listed below.
HK / RR0 / 3Counts resolved for the local TCS neighborhood.
Context span29292-31842Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP74_08670RefSeq proteinWP_009203799.1
Context group ID
GCF_020537325::NZ_JAJBMH010000018.1::G00002Context members
LIP74_RS08680LIP74_RS08685LIP74_RS08690
Partner locus tags
LIP74_RS08680LIP74_RS08685LIP74_RS08690
Partner old locus tags
LIP74_08665LIP74_08670LIP74_08675
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009203799.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2HX99Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2HX99_ANAHADisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP74_RS08685Primary locus identifier stored in the genes table.
Old locus tagLIP74_08670Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBMH010000018.1Sequence record reported by the local genomic context database.
Genomic interval30 119-30 958 nt840 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span29 292-31 842 ntGCF_020537325::NZ_JAJBMH010000018.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537325::NZ_JAJBMH010000018.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBMH010000018.1All displayed genes belong to this local TCS context.
Neighborhood span29 292-31 842 nt2 551 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 292 nt31 842 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
LIP74_RS08680GCF_020537325#LIP74_RS08680
RRSpo0A
29 292-30 098 nt · Forward (+)
LIP74_RS08685GCF_020537325#LIP74_RS08685
RRSpo0ACurrent focus
30 119-30 958 nt · Forward (+)
LIP74_RS08690GCF_020537325#LIP74_RS08690
RRSpo0A
31 027-31 842 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000332875#HMPREF0369_RS07435Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0609928
Simplified PFAM architecture for RROC_0609928
PFAM domain coverage: 217 / 272 aa (79.8%)
1 aa272 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[7-119] | Spo0A_C[160-263]
- Domain count: 2
- Matched identifier: RROC_0609928
- Positioned domains: Response_reg 7-119 ; Response_reg 7-119 ; Spo0A_C 160-263 ; Spo0A_C 160-263
Cluster members and taxonomy
Representative gene: GCF_000332875#HMPREF0369_RS07435
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_020537325
AssemblyASM2053732v1 · Contighaploid
Genome composition3 242 192 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 54 · HK 28 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key