1 PAS_3#1
39-127 aa · 89 aa · 9.5% of protein
Raw token
PAS_3:39:5.94e-21:127:89:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP74_RS08505
Histidine kinase, Hybrid
Anaerostipes hadrus · GCF_020537325
ClassHKTypeHybridLength939 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020537325#LIP74_RS08505Stable P2CS identifier used across views.
GenomeGCF_020537325Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length939 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage505 / 939 aa (53.8%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa939 aa
Domain-by-domain annotation5 items
2 HisKA#2
429-495 aa · 67 aa · 7.1% of protein
Raw token
HisKA:429:2.23e-16:495:67:643 HATPase_c#3
542-656 aa · 115 aa · 12.2% of protein
Raw token
HATPase_c:542:1.12e-30:656:115:1094 Response_reg#4
676-792 aa · 117 aa · 12.5% of protein
Raw token
Response_reg:676:2.55e-19:792:117:1115 Response_reg#5
820-936 aa · 117 aa · 12.5% of protein
Raw token
Response_reg:820:5.47e-29:936:117:111- Raw architecture: PAS_3:39:5.94e-21:127:89:89#HisKA:429:2.23e-16:495:67:64#HATPase_c:542:1.12e-30:656:115:109#Response_reg:676:2.55e-19:792:117:111#Response_reg:820:5.47e-29:936:117:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020537325::NZ_JAJBMH010000017.1::G00001
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span73314-76133Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP74_08490RefSeq proteinWP_226799448.1
Context group ID
GCF_020537325::NZ_JAJBMH010000017.1::G00001Context members
LIP74_RS08505
Partner locus tags
LIP74_RS08505
Partner old locus tags
LIP74_08490
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226799448.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP74_RS08505Primary locus identifier stored in the genes table.
Old locus tagLIP74_08490Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBMH010000017.1Sequence record reported by the local genomic context database.
Genomic interval73 314-76 133 nt2 820 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span73 314-76 133 ntGCF_020537325::NZ_JAJBMH010000017.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537325::NZ_JAJBMH010000017.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBMH010000017.1All displayed genes belong to this local TCS context.
Neighborhood span73 314-76 133 nt2 820 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 314 nt76 133 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIP74_RS08505GCF_020537325#LIP74_RS08505
HKHybridCurrent focus
73 314-76 133 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302355#G4946_RS07545Use this link to inspect the representative gene detail.
PFAM architecturePAS_3 + HisKA + HATPase_c + Response_reg + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0341549
Simplified PFAM architecture for HKOC_0341549
PFAM domain coverage: 506 / 939 aa (53.9%)
1 aa939 aa
PAS_3HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: PAS_3 + HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: PAS_3[38-127] | HisKA[429-495] | HATPase_c[542-658] | Response_reg[676-791] | Response_reg[820-935]
- Domain count: 5
- Matched identifier: HKOC_0341549
- Positioned domains: PAS_3 38-127 ; HisKA 429-495 ; HATPase_c 542-658 ; Response_reg 676-791 ; Response_reg 820-935
Cluster members and taxonomy
Representative gene: GCF_013302355#G4946_RS07545
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_020537325
AssemblyASM2053732v1 · Contighaploid
Genome composition3 242 192 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 54 · HK 28 · RR 25CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key