1 Hpt#1
4-70 aa · 67 aa · 9.6% of protein
Raw token
Hpt:4:0.0000000000000149:70:67:84P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP96_RS08130
Histidine kinase, CheA
Mediterraneibacter gnavus · GCF_020537205
ClassHKTypeCheALength697 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020537205#LIP96_RS08130Stable P2CS identifier used across views.
GenomeGCF_020537205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HptH-kinase_dimHATPase_cCheW
Protein length697 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage402 / 697 aa (57.7%)Merged over positioned domains only.
Domain description1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheWSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa697 aa
Domain-by-domain annotation4 items
2 H-kinase_dim#2
305-366 aa · 62 aa · 8.9% of protein
Raw token
H-kinase_dim:305:0.000000000000458:366:67:673 HATPase_c#3
413-553 aa · 141 aa · 20.2% of protein
Raw token
HATPase_c:413:1.41e-16:553:141:1094 CheW#4
558-689 aa · 132 aa · 18.9% of protein
Raw token
CheW:558:5.17e-17:689:134:138- Raw architecture: Hpt:4:0.0000000000000149:70:67:84#H-kinase_dim:305:0.000000000000458:366:67:67#HATPase_c:413:1.41e-16:553:141:109#CheW:558:5.17e-17:689:134:138
- Domain description: 1 Hpt,1 H-kinase_dim,1 HATPase_c,1 CheW
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020537205::NZ_JAJBLZ010000014.1::G00009
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span70944-73037Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP96_08130RefSeq proteinWP_144362700.1
Context group ID
GCF_020537205::NZ_JAJBLZ010000014.1::G00009Context members
LIP96_RS08130
Partner locus tags
LIP96_RS08130
Partner old locus tags
LIP96_08130
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_144362700.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ1ER88Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ1ER88_MEDGNDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP96_RS08130Primary locus identifier stored in the genes table.
Old locus tagLIP96_08130Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBLZ010000014.1Sequence record reported by the local genomic context database.
Genomic interval70 944-73 037 nt2 094 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span70 944-73 037 ntGCF_020537205::NZ_JAJBLZ010000014.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537205::NZ_JAJBLZ010000014.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBLZ010000014.1All displayed genes belong to this local TCS context.
Neighborhood span70 944-73 037 nt2 094 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
70 944 nt73 037 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIP96_RS08130GCF_020537205#LIP96_RS08130
HKCheACurrent focus
70 944-73 037 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299885#G4418_RS10795Use this link to inspect the representative gene detail.
PFAM architectureHpt + P2 + H-kinase_dim + HATPase_c + CheW5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0776360
Simplified PFAM architecture for HKOC_0776360
PFAM domain coverage: 516 / 697 aa (74.0%)
1 aa697 aa
HptP2H-kinase_dimHATPase_cCheW
- Simplified architecture: Hpt + P2 + H-kinase_dim + HATPase_c + CheW
- Raw architecture: Hpt[4-107] | P2[175-254] | H-kinase_dim[305-365] | HATPase_c[414-553] | CheW[559-689]
- Domain count: 5
- Matched identifier: HKOC_0776360
- Positioned domains: Hpt 4-107 ; P2 175-254 ; H-kinase_dim 305-365 ; HATPase_c 414-553 ; CheW 559-689
Cluster members and taxonomy
Representative gene: GCF_013299885#G4418_RS10795
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_020537205
AssemblyASM2053720v1 · Contighaploid
Genome composition3 753 124 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 98 · HK 51 · RR 47CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key