1 HAMP#1
74-143 aa · 70 aa · 18.1% of protein
Raw token
HAMP:74:0.0000000000148:143:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP96_RS01045
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_020537205
ClassHKTypeClassicLength387 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537205#LIP96_RS01045Stable P2CS identifier used across views.
GenomeGCF_020537205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length387 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 387 aa (61.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa387 aa
Domain-by-domain annotation3 items
2 HisKA#2
168-232 aa · 65 aa · 16.8% of protein
Raw token
HisKA:168:0.000000000176:232:65:643 HATPase_c#3
278-381 aa · 104 aa · 26.9% of protein
Raw token
HATPase_c:278:3.13e-18:381:109:109- Raw architecture: HAMP:74:0.0000000000148:143:70:69#HisKA:168:0.000000000176:232:65:64#HATPase_c:278:3.13e-18:381:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537205::NZ_JAJBLZ010000001.1::G00002
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span217385-219412Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP96_01045RefSeq proteinWP_226970737.1
Context group ID
GCF_020537205::NZ_JAJBLZ010000001.1::G00002Context members
LIP96_RS01040LIP96_RS01045
Partner locus tags
LIP96_RS01040LIP96_RS01045
Partner old locus tags
LIP96_01040LIP96_01045
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226970737.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP96_RS01045Primary locus identifier stored in the genes table.
Old locus tagLIP96_01045Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBLZ010000001.1Sequence record reported by the local genomic context database.
Genomic interval218 249-219 412 nt1 164 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span217 385-219 412 ntGCF_020537205::NZ_JAJBLZ010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537205::NZ_JAJBLZ010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBLZ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span217 385-219 412 nt2 028 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
217 385 nt219 412 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP96_RS01040GCF_020537205#LIP96_RS01040
RROmpR
217 385-218 056 nt · Forward (+)
LIP96_RS01045GCF_020537205#LIP96_RS01045
HKClassicCurrent focus
218 249-219 412 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020537205#LIP96_RS01045The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2553063
Simplified PFAM architecture for HKOC_2553063
PFAM domain coverage: 217 / 387 aa (56.1%)
1 aa387 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[93-142] | HisKA[169-232] | HATPase_c[279-381]
- Domain count: 3
- Matched identifier: HKOC_2553063
- Positioned domains: HAMP 93-142 ; HisKA 169-232 ; HATPase_c 279-381
Cluster members and taxonomy
Representative gene: GCF_020537205#LIP96_RS01045
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_020537205
AssemblyASM2053720v1 · Contighaploid
Genome composition3 753 124 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 98 · HK 51 · RR 47CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key