1 Response_reg#1
3-119 aa · 117 aa · 35.0% of protein
Raw token
Response_reg:3:5.03e-30:119:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP96_RS04645
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_020537205
ClassRRTypeunclassifiedLength334 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537205#LIP96_RS04645Stable P2CS identifier used across views.
GenomeGCF_020537205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length334 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage190 / 334 aa (56.9%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa334 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
241-277 aa · 37 aa · 11.1% of protein
Raw token
HTH_AraC:241:0.0000000103:277:37:423 HTH_AraC#3
294-329 aa · 36 aa · 10.8% of protein
Raw token
HTH_AraC:294:0.00000119:329:36:42- Raw architecture: Response_reg:3:5.03e-30:119:117:111#HTH_AraC:241:0.0000000103:277:37:42#HTH_AraC:294:0.00000119:329:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537205::NZ_JAJBLZ010000007.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1934-4733Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP96_04645RefSeq proteinWP_118341421.1
Context group ID
GCF_020537205::NZ_JAJBLZ010000007.1::G00049Context members
LIP96_RS04640LIP96_RS04645
Partner locus tags
LIP96_RS04640LIP96_RS04645
Partner old locus tags
LIP96_04640LIP96_04645
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118341421.1Primary protein accession used for annex mappings.
UniProt accessionA0A8B3BUV0Primary UniProt accession resolved in the annex database.
UniProt IDA0A8B3BUV0_MEDGNDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP96_RS04645Primary locus identifier stored in the genes table.
Old locus tagLIP96_04645Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBLZ010000007.1Sequence record reported by the local genomic context database.
Genomic interval3 729-4 733 nt1 005 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 934-4 733 ntGCF_020537205::NZ_JAJBLZ010000007.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537205::NZ_JAJBLZ010000007.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBLZ010000007.1All displayed genes belong to this local TCS context.
Neighborhood span1 934-4 733 nt2 800 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 934 nt4 733 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP96_RS04640GCF_020537205#LIP96_RS04640
HKClassic
1 934-3 748 nt · Forward (+)
LIP96_RS04645GCF_020537205#LIP96_RS04645
RRunclassifiedCurrent focus
3 729-4 733 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003473185#DW142_RS05695Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0513624
Simplified PFAM architecture for RROC_0513624
PFAM domain coverage: 187 / 334 aa (56.0%)
1 aa334 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-111] | HTH_18[252-329]
- Domain count: 2
- Matched identifier: RROC_0513624
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; HTH_18 252-329 ; HTH_18 252-329
Cluster members and taxonomy
Representative gene: GCF_003473185#DW142_RS05695
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_020537205
AssemblyASM2053720v1 · Contighaploid
Genome composition3 753 124 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 98 · HK 51 · RR 47CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key