1 HAMP#1
288-351 aa · 64 aa · 10.6% of protein
Raw token
HAMP:288:0.000000473:351:64:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP96_RS04640
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_020537205
ClassHKTypeClassicLength604 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537205#LIP96_RS04640Stable P2CS identifier used across views.
GenomeGCF_020537205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length604 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage256 / 604 aa (42.4%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa604 aa
Domain-by-domain annotation3 items
2 His_kinase#2
372-448 aa · 77 aa · 12.7% of protein
Raw token
His_kinase:372:4.48e-26:448:77:803 HATPase_c#3
462-576 aa · 115 aa · 19.0% of protein
Raw token
HATPase_c:462:2.05e-17:576:115:109- Raw architecture: HAMP:288:0.000000473:351:64:69#His_kinase:372:4.48e-26:448:77:80#HATPase_c:462:2.05e-17:576:115:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537205::NZ_JAJBLZ010000007.1::G00049
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1934-4733Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP96_04640RefSeq proteinWP_055169462.1
Context group ID
GCF_020537205::NZ_JAJBLZ010000007.1::G00049Context members
LIP96_RS04640LIP96_RS04645
Partner locus tags
LIP96_RS04640LIP96_RS04645
Partner old locus tags
LIP96_04640LIP96_04645
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055169462.1Primary protein accession used for annex mappings.
UniProt accessionA0A396G314Primary UniProt accession resolved in the annex database.
UniProt IDA0A396G314_MEDGNDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP96_RS04640Primary locus identifier stored in the genes table.
Old locus tagLIP96_04640Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBLZ010000007.1Sequence record reported by the local genomic context database.
Genomic interval1 934-3 748 nt1 815 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 934-4 733 ntGCF_020537205::NZ_JAJBLZ010000007.1::G00049
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537205::NZ_JAJBLZ010000007.1::G00049Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBLZ010000007.1All displayed genes belong to this local TCS context.
Neighborhood span1 934-4 733 nt2 800 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 934 nt4 733 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP96_RS04640GCF_020537205#LIP96_RS04640
HKClassicCurrent focus
1 934-3 748 nt · Forward (+)
LIP96_RS04645GCF_020537205#LIP96_RS04645
RRunclassified
3 729-4 733 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001406655#ARA00_RS12080Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1033066
Simplified PFAM architecture for HKOC_1033066
PFAM domain coverage: 191 / 604 aa (31.6%)
1 aa604 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[373-448] | HATPase_c[462-576]
- Domain count: 2
- Matched identifier: HKOC_1033066
- Positioned domains: His_kinase 373-448 ; HATPase_c 462-576
Cluster members and taxonomy
Representative gene: GCF_001406655#ARA00_RS12080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_020537205
AssemblyASM2053720v1 · Contighaploid
Genome composition3 753 124 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 98 · HK 51 · RR 47CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key