1 Response_reg#1
7-119 aa · 113 aa · 21.7% of protein
Raw token
Response_reg:7:8.41e-22:119:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP96_RS04350
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_020537205
ClassRRTypeunclassifiedLength520 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537205#LIP96_RS04350Stable P2CS identifier used across views.
GenomeGCF_020537205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length520 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage189 / 520 aa (36.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa520 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
426-465 aa · 40 aa · 7.7% of protein
Raw token
HTH_AraC:426:0.00000000772:465:40:423 HTH_AraC#3
478-513 aa · 36 aa · 6.9% of protein
Raw token
HTH_AraC:478:0.000000173:513:36:42- Raw architecture: Response_reg:7:8.41e-22:119:113:111#HTH_AraC:426:0.00000000772:465:40:42#HTH_AraC:478:0.000000173:513:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537205::NZ_JAJBLZ010000006.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span37798-41056Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP96_04350RefSeq proteinWP_226970872.1
Context group ID
GCF_020537205::NZ_JAJBLZ010000006.1::G00042Context members
LIP96_RS04350LIP96_RS18735
Partner locus tags
LIP96_RS04350LIP96_RS18735
Partner old locus tags
LIP96_04350LIP96_04355
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226970872.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP96_RS04350Primary locus identifier stored in the genes table.
Old locus tagLIP96_04350Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBLZ010000006.1Sequence record reported by the local genomic context database.
Genomic interval37 798-39 360 nt1 563 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span37 798-41 056 ntGCF_020537205::NZ_JAJBLZ010000006.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537205::NZ_JAJBLZ010000006.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBLZ010000006.1All displayed genes belong to this local TCS context.
Neighborhood span37 798-41 056 nt3 259 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
37 798 nt41 056 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP96_RS04350GCF_020537205#LIP96_RS04350
RRunclassifiedCurrent focus
37 798-39 360 nt · Reverse (-)
LIP96_RS18735GCF_020537205#LIP96_RS18735
HKClassic
39 326-41 056 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020537205#LIP96_RS04350The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0126594
Simplified PFAM architecture for RROC_0126594
PFAM domain coverage: 192 / 520 aa (36.9%)
1 aa520 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[7-119] | HTH_18[437-515]
- Domain count: 2
- Matched identifier: RROC_0126594
- Positioned domains: Response_reg 7-119 ; HTH_18 437-515
Cluster members and taxonomy
Representative gene: GCF_020537205#LIP96_RS04350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_020537205
AssemblyASM2053720v1 · Contighaploid
Genome composition3 753 124 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 98 · HK 51 · RR 47CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key