1 HisKA#1
286-353 aa · 68 aa · 13.2% of protein
Raw token
HisKA:286:0.00000000000242:353:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP96_RS03945
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_020537205
ClassHKTypeClassicLength514 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537205#LIP96_RS03945Stable P2CS identifier used across views.
GenomeGCF_020537205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length514 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 514 aa (35.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa514 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
397-509 aa · 113 aa · 22.0% of protein
Raw token
HATPase_c:397:1.02e-28:509:113:109- Raw architecture: HisKA:286:0.00000000000242:353:68:64#HATPase_c:397:1.02e-28:509:113:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537205::NZ_JAJBLZ010000005.1::G00036
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span63320-65561Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP96_03945RefSeq proteinWP_118014074.1
Context group ID
GCF_020537205::NZ_JAJBLZ010000005.1::G00036Context members
LIP96_RS03940LIP96_RS03945
Partner locus tags
LIP96_RS03940LIP96_RS03945
Partner old locus tags
LIP96_03940LIP96_03945
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118014074.1Primary protein accession used for annex mappings.
UniProt accessionA0A412BW44Primary UniProt accession resolved in the annex database.
UniProt IDA0A412BW44_MEDGNDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP96_RS03945Primary locus identifier stored in the genes table.
Old locus tagLIP96_03945Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBLZ010000005.1Sequence record reported by the local genomic context database.
Genomic interval64 017-65 561 nt1 545 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span63 320-65 561 ntGCF_020537205::NZ_JAJBLZ010000005.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537205::NZ_JAJBLZ010000005.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBLZ010000005.1All displayed genes belong to this local TCS context.
Neighborhood span63 320-65 561 nt2 242 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
63 320 nt65 561 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP96_RS03940GCF_020537205#LIP96_RS03940
RROmpR
63 320-64 024 nt · Reverse (-)
LIP96_RS03945GCF_020537205#LIP96_RS03945
HKClassicCurrent focus
64 017-65 561 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003457855#DWY88_RS12805Use this link to inspect the representative gene detail.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1412118
Simplified PFAM architecture for HKOC_1412118
PFAM domain coverage: 286 / 514 aa (55.6%)
1 aa514 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[17-123] | HisKA[286-353] | HATPase_c[398-508]
- Domain count: 3
- Matched identifier: HKOC_1412118
- Positioned domains: DUF4118 17-123 ; HisKA 286-353 ; HATPase_c 398-508
Cluster members and taxonomy
Representative gene: GCF_003457855#DWY88_RS12805
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_020537205
AssemblyASM2053720v1 · Contighaploid
Genome composition3 753 124 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 98 · HK 51 · RR 47CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key