1 Response_reg#1
4-108 aa · 105 aa · 44.1% of protein
Raw token
Response_reg:4:1.97e-16:108:108:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP96_RS03260
Response regulator LytTR family
Mediterraneibacter gnavus · GCF_020537205
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020537205#LIP96_RS03260Stable P2CS identifier used across views.
GenomeGCF_020537205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage197 / 238 aa (82.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
138-229 aa · 92 aa · 38.7% of protein
Raw token
LytTR:138:2.33e-18:229:97:98- Raw architecture: Response_reg:4:1.97e-16:108:108:111#LytTR:138:2.33e-18:229:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020537205::NZ_JAJBLZ010000004.1::G00028
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span68687-69403Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP96_03260RefSeq proteinWP_023923766.1
Context group ID
GCF_020537205::NZ_JAJBLZ010000004.1::G00028Context members
LIP96_RS03260
Partner locus tags
LIP96_RS03260
Partner old locus tags
LIP96_03260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_023923766.1Primary protein accession used for annex mappings.
UniProt accessionA0A829NZ52Primary UniProt accession resolved in the annex database.
UniProt IDA0A829NZ52_MEDG5Display identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP96_RS03260Primary locus identifier stored in the genes table.
Old locus tagLIP96_03260Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBLZ010000004.1Sequence record reported by the local genomic context database.
Genomic interval68 687-69 403 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span68 687-69 403 ntGCF_020537205::NZ_JAJBLZ010000004.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537205::NZ_JAJBLZ010000004.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBLZ010000004.1All displayed genes belong to this local TCS context.
Neighborhood span68 687-69 403 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
68 687 nt69 403 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LIP96_RS03260GCF_020537205#LIP96_RS03260
RRLytTRCurrent focus
68 687-69 403 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169475#RUMGNA_RS15980Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0932676
Simplified PFAM architecture for RROC_0932676
PFAM domain coverage: 194 / 238 aa (81.5%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-108] | LytTR[141-229]
- Domain count: 2
- Matched identifier: RROC_0932676
- Positioned domains: Response_reg 4-108 ; Response_reg 4-108 ; LytTR 141-229 ; LytTR 141-229
Cluster members and taxonomy
Representative gene: GCF_000169475#RUMGNA_RS15980
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 50 over 170 total members. Page 1 / 4.
GCF_000169475#RUMGNA_RS15980 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_020537205
AssemblyASM2053720v1 · Contighaploid
Genome composition3 753 124 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 98 · HK 51 · RR 47CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key