1 Response_reg#1
5-111 aa · 107 aa · 48.2% of protein
Raw token
Response_reg:5:3.13e-23:111:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP96_RS03065
Response regulator OmpR family
Mediterraneibacter gnavus · GCF_020537205
ClassRRTypeOmpRLength222 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537205#LIP96_RS03065Stable P2CS identifier used across views.
GenomeGCF_020537205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length222 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 222 aa (82.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa222 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
141-217 aa · 77 aa · 34.7% of protein
Raw token
Trans_reg_C:141:1.34e-29:217:77:77- Raw architecture: Response_reg:5:3.13e-23:111:109:111#Trans_reg_C:141:1.34e-29:217:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537205::NZ_JAJBLZ010000004.1::G00027
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span21491-23094Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP96_03065RefSeq proteinWP_226970805.1
Context group ID
GCF_020537205::NZ_JAJBLZ010000004.1::G00027Context members
LIP96_RS03065LIP96_RS03070
Partner locus tags
LIP96_RS03065LIP96_RS03070
Partner old locus tags
LIP96_03065LIP96_03070
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226970805.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP96_RS03065Primary locus identifier stored in the genes table.
Old locus tagLIP96_03065Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBLZ010000004.1Sequence record reported by the local genomic context database.
Genomic interval21 491-22 159 nt669 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span21 491-23 094 ntGCF_020537205::NZ_JAJBLZ010000004.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537205::NZ_JAJBLZ010000004.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBLZ010000004.1All displayed genes belong to this local TCS context.
Neighborhood span21 491-23 094 nt1 604 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
21 491 nt23 094 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP96_RS03065GCF_020537205#LIP96_RS03065
RROmpRCurrent focus
21 491-22 159 nt · Forward (+)
LIP96_RS03070GCF_020537205#LIP96_RS03070
HKClassic
22 156-23 094 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020537205#LIP96_RS03065The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1656692
Simplified PFAM architecture for RROC_1656692
PFAM domain coverage: 184 / 222 aa (82.9%)
1 aa222 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-110] | Trans_reg_C[141-217]
- Domain count: 2
- Matched identifier: RROC_1656692
- Positioned domains: Response_reg 4-110 ; Trans_reg_C 141-217
Cluster members and taxonomy
Representative gene: GCF_020537205#LIP96_RS03065
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_020537205
AssemblyASM2053720v1 · Contighaploid
Genome composition3 753 124 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 98 · HK 51 · RR 47CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key