1 HAMP#1
94-161 aa · 68 aa · 17.3% of protein
Raw token
HAMP:94:0.00000000511:161:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP96_RS02960
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_020537205
ClassHKTypeClassicLength392 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537205#LIP96_RS02960Stable P2CS identifier used across views.
GenomeGCF_020537205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length392 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage237 / 392 aa (60.5%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa392 aa
Domain-by-domain annotation3 items
2 HisKA#2
179-241 aa · 63 aa · 16.1% of protein
Raw token
HisKA:179:0.000000724:241:63:643 HATPase_c#3
287-392 aa · 106 aa · 27.0% of protein
Raw token
HATPase_c:287:6.79e-20:392:108:109- Raw architecture: HAMP:94:0.00000000511:161:68:69#HisKA:179:0.000000724:241:63:64#HATPase_c:287:6.79e-20:392:108:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537205::NZ_JAJBLZ010000004.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1512-3352Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP96_02960RefSeq proteinWP_023923779.1
Context group ID
GCF_020537205::NZ_JAJBLZ010000004.1::G00026Context members
LIP96_RS02955LIP96_RS02960
Partner locus tags
LIP96_RS02955LIP96_RS02960
Partner old locus tags
LIP96_02955LIP96_02960
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_023923779.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ3KMT5Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ3KMT5_MEDGNDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP96_RS02960Primary locus identifier stored in the genes table.
Old locus tagLIP96_02960Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBLZ010000004.1Sequence record reported by the local genomic context database.
Genomic interval2 174-3 352 nt1 179 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span1 512-3 352 ntGCF_020537205::NZ_JAJBLZ010000004.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537205::NZ_JAJBLZ010000004.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBLZ010000004.1All displayed genes belong to this local TCS context.
Neighborhood span1 512-3 352 nt1 841 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 512 nt3 352 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP96_RS02955GCF_020537205#LIP96_RS02955
RROmpR
1 512-2 186 nt · Forward (+)
LIP96_RS02960GCF_020537205#LIP96_RS02960
HKClassicCurrent focus
2 174-3 352 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000507805#HMPREF1201_RS04615Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2511793
Simplified PFAM architecture for HKOC_2511793
PFAM domain coverage: 214 / 392 aa (54.6%)
1 aa392 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[114-160] | HisKA[179-241] | HATPase_c[287-390]
- Domain count: 3
- Matched identifier: HKOC_2511793
- Positioned domains: HAMP 114-160 ; HisKA 179-241 ; HATPase_c 287-390
Cluster members and taxonomy
Representative gene: GCF_000507805#HMPREF1201_RS04615
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_020537205
AssemblyASM2053720v1 · Contighaploid
Genome composition3 753 124 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 98 · HK 51 · RR 47CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key