1 HAMP#1
301-373 aa · 73 aa · 12.2% of protein
Raw token
HAMP:301:0.000000018:373:73:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP96_RS02395
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_020537205
ClassHKTypeClassicLength600 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537205#LIP96_RS02395Stable P2CS identifier used across views.
GenomeGCF_020537205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length600 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage237 / 600 aa (39.5%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa600 aa
Domain-by-domain annotation3 items
2 His_kinase#2
384-462 aa · 79 aa · 13.2% of protein
Raw token
His_kinase:384:3.54e-24:462:79:803 HATPase_c#3
479-563 aa · 85 aa · 14.2% of protein
Raw token
HATPase_c:479:0.00000169:563:85:109- Raw architecture: HAMP:301:0.000000018:373:73:69#His_kinase:384:3.54e-24:462:79:80#HATPase_c:479:0.00000169:563:85:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537205::NZ_JAJBLZ010000003.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span52536-55092Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP96_02395RefSeq proteinWP_118262961.1
Context group ID
GCF_020537205::NZ_JAJBLZ010000003.1::G00022Context members
LIP96_RS02390LIP96_RS02395
Partner locus tags
LIP96_RS02390LIP96_RS02395
Partner old locus tags
LIP96_02390LIP96_02395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118262961.1Primary protein accession used for annex mappings.
UniProt accessionA0A414SI01Primary UniProt accession resolved in the annex database.
UniProt IDA0A414SI01_MEDGNDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP96_RS02395Primary locus identifier stored in the genes table.
Old locus tagLIP96_02395Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBLZ010000003.1Sequence record reported by the local genomic context database.
Genomic interval53 290-55 092 nt1 803 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span52 536-55 092 ntGCF_020537205::NZ_JAJBLZ010000003.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537205::NZ_JAJBLZ010000003.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBLZ010000003.1All displayed genes belong to this local TCS context.
Neighborhood span52 536-55 092 nt2 557 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
52 536 nt55 092 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP96_RS02390GCF_020537205#LIP96_RS02390
RRunclassified
52 536-53 288 nt · Reverse (-)
LIP96_RS02395GCF_020537205#LIP96_RS02395
HKClassicCurrent focus
53 290-55 092 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003471005#DW270_RS08440Use this link to inspect the representative gene detail.
PFAM architectureHis_kinase + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1053607
Simplified PFAM architecture for HKOC_1053607
PFAM domain coverage: 156 / 600 aa (26.0%)
1 aa600 aa
His_kinaseHATPase_c
- Simplified architecture: His_kinase + HATPase_c
- Raw architecture: His_kinase[391-465] | HATPase_c[484-564]
- Domain count: 2
- Matched identifier: HKOC_1053607
- Positioned domains: His_kinase 391-465 ; HATPase_c 484-564
Cluster members and taxonomy
Representative gene: GCF_003471005#DW270_RS08440
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_020537205
AssemblyASM2053720v1 · Contighaploid
Genome composition3 753 124 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 98 · HK 51 · RR 47CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key