1 Response_reg#1
5-117 aa · 113 aa · 45.2% of protein
Raw token
Response_reg:5:5.91e-30:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP96_RS02390
Response regulator, unclassified
Mediterraneibacter gnavus · GCF_020537205
ClassRRTypeunclassifiedLength250 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537205#LIP96_RS02390Stable P2CS identifier used across views.
GenomeGCF_020537205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length250 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage191 / 250 aa (76.4%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa250 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
154-195 aa · 42 aa · 16.8% of protein
Raw token
HTH_AraC:154:0.0000000123:195:42:423 HTH_AraC#3
211-246 aa · 36 aa · 14.4% of protein
Raw token
HTH_AraC:211:0.0000000132:246:36:42- Raw architecture: Response_reg:5:5.91e-30:117:113:111#HTH_AraC:154:0.0000000123:195:42:42#HTH_AraC:211:0.0000000132:246:36:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537205::NZ_JAJBLZ010000003.1::G00022
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span52536-55092Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP96_02390RefSeq proteinWP_118262959.1
Context group ID
GCF_020537205::NZ_JAJBLZ010000003.1::G00022Context members
LIP96_RS02390LIP96_RS02395
Partner locus tags
LIP96_RS02390LIP96_RS02395
Partner old locus tags
LIP96_02390LIP96_02395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118262959.1Primary protein accession used for annex mappings.
UniProt accessionA0A414SIB6Primary UniProt accession resolved in the annex database.
UniProt IDA0A414SIB6_MEDGNDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP96_RS02390Primary locus identifier stored in the genes table.
Old locus tagLIP96_02390Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBLZ010000003.1Sequence record reported by the local genomic context database.
Genomic interval52 536-53 288 nt753 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span52 536-55 092 ntGCF_020537205::NZ_JAJBLZ010000003.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537205::NZ_JAJBLZ010000003.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBLZ010000003.1All displayed genes belong to this local TCS context.
Neighborhood span52 536-55 092 nt2 557 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
52 536 nt55 092 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP96_RS02390GCF_020537205#LIP96_RS02390
RRunclassifiedCurrent focus
52 536-53 288 nt · Reverse (-)
LIP96_RS02395GCF_020537205#LIP96_RS02395
HKClassic
53 290-55 092 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003471005#DW270_RS08435Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0724168
Simplified PFAM architecture for RROC_0724168
PFAM domain coverage: 192 / 250 aa (76.8%)
1 aa250 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[167-246]
- Domain count: 2
- Matched identifier: RROC_0724168
- Positioned domains: Response_reg 5-116 ; Response_reg 5-116 ; HTH_18 167-246 ; HTH_18 167-246
Cluster members and taxonomy
Representative gene: GCF_003471005#DW270_RS08435
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_020537205
AssemblyASM2053720v1 · Contighaploid
Genome composition3 753 124 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 98 · HK 51 · RR 47CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key