1 HAMP#1
59-128 aa · 70 aa · 19.4% of protein
Raw token
HAMP:59:0.0000353:128:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LIP96_RS00040
Histidine kinase, Classic
Mediterraneibacter gnavus · GCF_020537205
ClassHKTypeClassicLength361 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020537205#LIP96_RS00040Stable P2CS identifier used across views.
GenomeGCF_020537205Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Mediterraneibacter
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length361 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 361 aa (68.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa361 aa
Domain-by-domain annotation3 items
2 HisKA#2
135-200 aa · 66 aa · 18.3% of protein
Raw token
HisKA:135:2.18e-17:200:66:643 HATPase_c#3
245-354 aa · 110 aa · 30.5% of protein
Raw token
HATPase_c:245:8.76e-32:354:110:109- Raw architecture: HAMP:59:0.0000353:128:70:69#HisKA:135:2.18e-17:200:66:64#HATPase_c:245:8.76e-32:354:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020537205::NZ_JAJBLZ010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span6706-8459Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLIP96_00040RefSeq proteinWP_119981579.1
Context group ID
GCF_020537205::NZ_JAJBLZ010000001.1::G00001Context members
LIP96_RS00035LIP96_RS00040
Partner locus tags
LIP96_RS00035LIP96_RS00040
Partner old locus tags
LIP96_00035LIP96_00040
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_119981579.1Primary protein accession used for annex mappings.
UniProt accessionA0AB36DEH6Primary UniProt accession resolved in the annex database.
UniProt IDA0AB36DEH6_MEDGNDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLIP96_RS00040Primary locus identifier stored in the genes table.
Old locus tagLIP96_00040Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAJBLZ010000001.1Sequence record reported by the local genomic context database.
Genomic interval7 374-8 459 nt1 086 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span6 706-8 459 ntGCF_020537205::NZ_JAJBLZ010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020537205::NZ_JAJBLZ010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAJBLZ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span6 706-8 459 nt1 754 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
6 706 nt8 459 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LIP96_RS00035GCF_020537205#LIP96_RS00035
RROmpR
6 706-7 377 nt · Forward (+)
LIP96_RS00040GCF_020537205#LIP96_RS00040
HKClassicCurrent focus
7 374-8 459 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013303805#G4981_RS01005Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2742905
Simplified PFAM architecture for HKOC_2742905
PFAM domain coverage: 174 / 361 aa (48.2%)
1 aa361 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[135-199] | HATPase_c[246-354]
- Domain count: 2
- Matched identifier: HKOC_2742905
- Positioned domains: HisKA 135-199 ; HATPase_c 246-354
Cluster members and taxonomy
Representative gene: GCF_013303805#G4981_RS01005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 33 038 · GCF_020537205
AssemblyASM2053720v1 · Contighaploid
Genome composition3 753 124 bp · 42,5% GCMediterraneibacter gnavus
Signal transduction countsGenes 98 · HK 51 · RR 47CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusMediterraneibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Mediterraneibacter
Related genes
Preview from the same derived genome key