1 Response_reg#1
13-114 aa · 102 aa · 43.6% of protein
Raw token
Response_reg:13:0.0000000000267:114:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KZP15_RS00350
Response regulator NarL family
Bifidobacterium pseudocatenulatum · GCF_020526605
ClassRRTypeNarLLength234 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020526605#KZP15_RS00350Stable P2CS identifier used across views.
GenomeGCF_020526605Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage159 / 234 aa (67.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa234 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
168-224 aa · 57 aa · 24.4% of protein
Raw token
HTH_LUXR:168:0.0000000000000135:224:57:58- Raw architecture: Response_reg:13:0.0000000000267:114:102:111#HTH_LUXR:168:0.0000000000000135:224:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020526605::NZ_JAHXFD010000001.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span80721-81425Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKZP15_00350RefSeq proteinWP_226563149.1
Context group ID
GCF_020526605::NZ_JAHXFD010000001.1::G00002Context members
KZP15_RS00350
Partner locus tags
KZP15_RS00350
Partner old locus tags
KZP15_00350
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226563149.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKZP15_RS00350Primary locus identifier stored in the genes table.
Old locus tagKZP15_00350Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAHXFD010000001.1Sequence record reported by the local genomic context database.
Genomic interval80 721-81 425 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span80 721-81 425 ntGCF_020526605::NZ_JAHXFD010000001.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020526605::NZ_JAHXFD010000001.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAHXFD010000001.1All displayed genes belong to this local TCS context.
Neighborhood span80 721-81 425 nt705 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
80 721 nt81 425 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
KZP15_RS00350GCF_020526605#KZP15_RS00350
RRNarLCurrent focus
80 721-81 425 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_020526605#KZP15_RS00350The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1063694
Simplified PFAM architecture for RROC_1063694
PFAM domain coverage: 159 / 234 aa (67.9%)
1 aa234 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[12-116] | GerE[170-223]
- Domain count: 2
- Matched identifier: RROC_1063694
- Positioned domains: Response_reg 12-116 ; GerE 170-223
Cluster members and taxonomy
Representative gene: GCF_020526605#KZP15_RS00350
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 28 026 · GCF_020526605
AssemblyASM2052660v1 · Contighaploid
Genome composition2 208 478 bp · 56,5% GCBifidobacterium pseudocatenulatum
Signal transduction countsGenes 23 · HK 10 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key