1 dCache_1#1
51-269 aa · 219 aa · 38.2% of protein
Raw token
dCache_1:51:0.00000000216:269:231:195P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LC479_RS11550
Histidine kinase, Classic
Blautia sp. RD014232 · GCF_020509505
ClassHKTypeClassicLength573 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020509505#LC479_RS11550Stable P2CS identifier used across views.
GenomeGCF_020509505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
dCache_1HAMPHis_kinaseHATPase_c
Protein length573 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage466 / 573 aa (81.3%)Merged over positioned domains only.
Domain description1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa573 aa
Domain-by-domain annotation4 items
2 HAMP#2
286-355 aa · 70 aa · 12.2% of protein
Raw token
HAMP:286:0.00000000163:355:70:693 His_kinase#3
371-445 aa · 75 aa · 13.1% of protein
Raw token
His_kinase:371:3.48e-24:445:75:804 HATPase_c#4
467-568 aa · 102 aa · 17.8% of protein
Raw token
HATPase_c:467:0.000000000024:568:109:109- Raw architecture: dCache_1:51:0.00000000216:269:231:195#HAMP:286:0.00000000163:355:70:69#His_kinase:371:3.48e-24:445:75:80#HATPase_c:467:0.000000000024:568:109:109
- Domain description: 1 dCache_1,1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020509505::NZ_JAIXOC010000001.1::G00055
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2521815-2525008Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLC479_11550RefSeq proteinWP_118743535.1
Context group ID
GCF_020509505::NZ_JAIXOC010000001.1::G00055Context members
LC479_RS11545LC479_RS11550
Partner locus tags
LC479_RS11545LC479_RS11550
Partner old locus tags
LC479_11545LC479_11550
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118743535.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7FGN2Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7FGN2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLC479_RS11550Primary locus identifier stored in the genes table.
Old locus tagLC479_11550Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAIXOC010000001.1Sequence record reported by the local genomic context database.
Genomic interval2 523 287-2 525 008 nt1 722 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 521 815-2 525 008 ntGCF_020509505::NZ_JAIXOC010000001.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020509505::NZ_JAIXOC010000001.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIXOC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span2 521 815-2 525 008 nt3 194 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 521 815 nt2 525 008 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LC479_RS11545GCF_020509505#LC479_RS11545
RRunclassified
2 521 815-2 523 290 nt · Reverse (-)
LC479_RS11550GCF_020509505#LC479_RS11550
HKClassicCurrent focus
2 523 287-2 525 008 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS28450Use this link to inspect the representative gene detail.
PFAM architecturedCache_1 + HAMP + His_kinase + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1198943
Simplified PFAM architecture for HKOC_1198943
PFAM domain coverage: 443 / 573 aa (77.3%)
1 aa573 aa
dCache_1HAMPHis_kinaseHATPase_c
- Simplified architecture: dCache_1 + HAMP + His_kinase + HATPase_c
- Raw architecture: dCache_1[50-265] | HAMP[306-354] | His_kinase[371-446] | HATPase_c[467-568]
- Domain count: 4
- Matched identifier: HKOC_1198943
- Positioned domains: dCache_1 50-265 ; HAMP 306-354 ; His_kinase 371-446 ; HATPase_c 467-568
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS28450
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 877 528 · GCF_020509505
AssemblyASM2050950v1 · Contighaploid
Genome composition6 238 908 bp · 46,5% GCBlautia sp. RD014232
Signal transduction countsGenes 262 · HK 135 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key