1 HAMP#1
104-169 aa · 66 aa · 16.1% of protein
Raw token
HAMP:104:0.0000116:169:66:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LC479_RS11085
Histidine kinase, Classic
Blautia sp. RD014232 · GCF_020509505
ClassHKTypeClassicLength409 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020509505#LC479_RS11085Stable P2CS identifier used across views.
GenomeGCF_020509505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length409 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage232 / 409 aa (56.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa409 aa
Domain-by-domain annotation3 items
2 HisKA#2
183-238 aa · 56 aa · 13.7% of protein
Raw token
HisKA:183:0.00000000235:238:56:643 HATPase_c#3
297-406 aa · 110 aa · 26.9% of protein
Raw token
HATPase_c:297:4.47e-19:406:111:109- Raw architecture: HAMP:104:0.0000116:169:66:69#HisKA:183:0.00000000235:238:56:64#HATPase_c:297:4.47e-19:406:111:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020509505::NZ_JAIXOC010000001.1::G00053
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2435132-2437023Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLC479_11085RefSeq proteinWP_054353226.1
Context group ID
GCF_020509505::NZ_JAIXOC010000001.1::G00053Context members
LC479_RS11085LC479_RS11090
Partner locus tags
LC479_RS11085LC479_RS11090
Partner old locus tags
LC479_11085LC479_11090
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_054353226.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7FKD2Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7FKD2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLC479_RS11085Primary locus identifier stored in the genes table.
Old locus tagLC479_11085Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAIXOC010000001.1Sequence record reported by the local genomic context database.
Genomic interval2 435 132-2 436 361 nt1 230 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 435 132-2 437 023 ntGCF_020509505::NZ_JAIXOC010000001.1::G00053
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020509505::NZ_JAIXOC010000001.1::G00053Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIXOC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span2 435 132-2 437 023 nt1 892 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 435 132 nt2 437 023 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LC479_RS11085GCF_020509505#LC479_RS11085
HKClassicCurrent focus
2 435 132-2 436 361 nt · Reverse (-)
LC479_RS11090GCF_020509505#LC479_RS11090
RROmpR
2 436 349-2 437 023 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS25035Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2364051
Simplified PFAM architecture for HKOC_2364051
PFAM domain coverage: 161 / 409 aa (39.4%)
1 aa409 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[183-237] | HATPase_c[298-403]
- Domain count: 2
- Matched identifier: HKOC_2364051
- Positioned domains: HisKA 183-237 ; HATPase_c 298-403
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS25035
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 877 528 · GCF_020509505
AssemblyASM2050950v1 · Contighaploid
Genome composition6 238 908 bp · 46,5% GCBlautia sp. RD014232
Signal transduction countsGenes 262 · HK 135 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key