1 PAS_3#1
153-237 aa · 85 aa · 8.0% of protein
Raw token
PAS_3:153:3.88e-16:237:85:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LC479_RS09805
Histidine kinase, Hybrid
Blautia sp. RD014232 · GCF_020509505
ClassHKTypeHybridLength1056 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020509505#LC479_RS09805Stable P2CS identifier used across views.
GenomeGCF_020509505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length1056 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage501 / 1056 aa (47.4%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1056 aa
Domain-by-domain annotation5 items
2 HisKA#2
536-602 aa · 67 aa · 6.3% of protein
Raw token
HisKA:536:0.00000000000000373:602:67:643 HATPase_c#3
649-766 aa · 118 aa · 11.2% of protein
Raw token
HATPase_c:649:2.58e-29:766:119:1094 Response_reg#4
789-902 aa · 114 aa · 10.8% of protein
Raw token
Response_reg:789:5.03e-22:902:114:1115 Response_reg#5
931-1047 aa · 117 aa · 11.1% of protein
Raw token
Response_reg:931:8.31e-29:1047:117:111- Raw architecture: PAS_3:153:3.88e-16:237:85:89#HisKA:536:0.00000000000000373:602:67:64#HATPase_c:649:2.58e-29:766:119:109#Response_reg:789:5.03e-22:902:114:111#Response_reg:931:8.31e-29:1047:117:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020509505::NZ_JAIXOC010000001.1::G00044
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span2151239-2157985Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLC479_09805RefSeq proteinWP_118594091.1
Context group ID
GCF_020509505::NZ_JAIXOC010000001.1::G00044Context members
LC479_RS09800LC479_RS09805
Partner locus tags
LC479_RS09800LC479_RS09805
Partner old locus tags
LC479_09800LC479_09805
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_118594091.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7FGG2Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7FGG2_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLC479_RS09805Primary locus identifier stored in the genes table.
Old locus tagLC479_09805Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAIXOC010000001.1Sequence record reported by the local genomic context database.
Genomic interval2 154 815-2 157 985 nt3 171 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 151 239-2 157 985 ntGCF_020509505::NZ_JAIXOC010000001.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020509505::NZ_JAIXOC010000001.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIXOC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span2 151 239-2 157 985 nt6 747 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 151 239 nt2 157 985 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LC479_RS09800GCF_020509505#LC479_RS09800
HKHybrid
2 151 239-2 154 589 nt · Forward (+)
LC479_RS09805GCF_020509505#LC479_RS09805
HKHybridCurrent focus
2 154 815-2 157 985 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS20760Use this link to inspect the representative gene detail.
PFAM architecturePAS_3 + HisKA + HATPase_c + Response_reg + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0255033
Simplified PFAM architecture for HKOC_0255033
PFAM domain coverage: 497 / 1056 aa (47.1%)
1 aa1056 aa
PAS_3HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: PAS_3 + HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: PAS_3[154-236] | HisKA[536-602] | HATPase_c[649-764] | Response_reg[789-902] | Response_reg[931-1047]
- Domain count: 5
- Matched identifier: HKOC_0255033
- Positioned domains: PAS_3 154-236 ; HisKA 536-602 ; HATPase_c 649-764 ; Response_reg 789-902 ; Response_reg 931-1047
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS20760
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 877 528 · GCF_020509505
AssemblyASM2050950v1 · Contighaploid
Genome composition6 238 908 bp · 46,5% GCBlautia sp. RD014232
Signal transduction countsGenes 262 · HK 135 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key