1 PAS_9#1
37-139 aa · 103 aa · 12.9% of protein
Raw token
PAS_9:37:0.00000556:139:105:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LC479_RS09720
Histidine kinase, Hybrid
Blautia sp. RD014232 · GCF_020509505
ClassHKTypeHybridLength800 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_020509505#LC479_RS09720Stable P2CS identifier used across views.
GenomeGCF_020509505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
PAS_9HisKAHATPase_cResponse_reg
Protein length800 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage512 / 800 aa (64.0%)Merged over positioned domains only.
Domain description1 PAS_9,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa800 aa
Domain-by-domain annotation5 items
2 HisKA#2
292-358 aa · 67 aa · 8.4% of protein
Raw token
HisKA:292:0.00000000000000209:358:67:643 HATPase_c#3
406-523 aa · 118 aa · 14.8% of protein
Raw token
HATPase_c:406:1.84e-29:523:118:1094 Response_reg#4
538-643 aa · 106 aa · 13.3% of protein
Raw token
Response_reg:538:6.23e-25:643:106:1115 Response_reg#5
679-796 aa · 118 aa · 14.8% of protein
Raw token
Response_reg:679:3.38e-30:796:118:111- Raw architecture: PAS_9:37:0.00000556:139:105:102#HisKA:292:0.00000000000000209:358:67:64#HATPase_c:406:1.84e-29:523:118:109#Response_reg:538:6.23e-25:643:106:111#Response_reg:679:3.38e-30:796:118:111
- Domain description: 1 PAS_9,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_020509505::NZ_JAIXOC010000001.1::G00042
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span2129477-2131879Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLC479_09720RefSeq proteinWP_186971055.1
Context group ID
GCF_020509505::NZ_JAIXOC010000001.1::G00042Context members
LC479_RS09720
Partner locus tags
LC479_RS09720
Partner old locus tags
LC479_09720
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_186971055.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7FE74Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7FE74_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLC479_RS09720Primary locus identifier stored in the genes table.
Old locus tagLC479_09720Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAIXOC010000001.1Sequence record reported by the local genomic context database.
Genomic interval2 129 477-2 131 879 nt2 403 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 129 477-2 131 879 ntGCF_020509505::NZ_JAIXOC010000001.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020509505::NZ_JAIXOC010000001.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIXOC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span2 129 477-2 131 879 nt2 403 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 129 477 nt2 131 879 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
LC479_RS09720GCF_020509505#LC479_RS09720
HKHybridCurrent focus
2 129 477-2 131 879 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS20845Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0556513
Simplified PFAM architecture for HKOC_0556513
PFAM domain coverage: 411 / 800 aa (51.4%)
1 aa800 aa
HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: HisKA[292-358] | HATPase_c[406-520] | Response_reg[538-651] | Response_reg[679-793]
- Domain count: 4
- Matched identifier: HKOC_0556513
- Positioned domains: HisKA 292-358 ; HATPase_c 406-520 ; Response_reg 538-651 ; Response_reg 679-793
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS20845
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 877 528 · GCF_020509505
AssemblyASM2050950v1 · Contighaploid
Genome composition6 238 908 bp · 46,5% GCBlautia sp. RD014232
Signal transduction countsGenes 262 · HK 135 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key