1 HAMP#1
148-217 aa · 70 aa · 15.8% of protein
Raw token
HAMP:148:0.0000109:217:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
LC479_RS09155
Histidine kinase, Classic
Blautia sp. RD014232 · GCF_020509505
ClassHKTypeClassicLength443 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_020509505#LC479_RS09155Stable P2CS identifier used across views.
GenomeGCF_020509505Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length443 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage232 / 443 aa (52.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa443 aa
Domain-by-domain annotation3 items
2 HisKA#2
230-290 aa · 61 aa · 13.8% of protein
Raw token
HisKA:230:0.0000000000509:290:61:643 HATPase_c#3
339-439 aa · 101 aa · 22.8% of protein
Raw token
HATPase_c:339:0.00000000000000182:439:101:109- Raw architecture: HAMP:148:0.0000109:217:70:69#HisKA:230:0.0000000000509:290:61:64#HATPase_c:339:0.00000000000000182:439:101:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_020509505::NZ_JAIXOC010000001.1::G00041
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2013722-2015703Genomic interval covered by the local TCS group.
Identifiers
Old locus tagLC479_09155RefSeq proteinWP_103730916.1
Context group ID
GCF_020509505::NZ_JAIXOC010000001.1::G00041Context members
LC479_RS09150LC479_RS09155
Partner locus tags
LC479_RS09150LC479_RS09155
Partner old locus tags
LC479_09150LC479_09155
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_103730916.1Primary protein accession used for annex mappings.
UniProt accessionA0ABR7FG37Primary UniProt accession resolved in the annex database.
UniProt IDA0ABR7FG37_9FIRMDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagLC479_RS09155Primary locus identifier stored in the genes table.
Old locus tagLC479_09155Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAIXOC010000001.1Sequence record reported by the local genomic context database.
Genomic interval2 014 372-2 015 703 nt1 332 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 013 722-2 015 703 ntGCF_020509505::NZ_JAIXOC010000001.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_020509505::NZ_JAIXOC010000001.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAIXOC010000001.1All displayed genes belong to this local TCS context.
Neighborhood span2 013 722-2 015 703 nt1 982 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 013 722 nt2 015 703 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
LC479_RS09150GCF_020509505#LC479_RS09150
RROmpR
2 013 722-2 014 396 nt · Forward (+)
LC479_RS09155GCF_020509505#LC479_RS09155
HKClassicCurrent focus
2 014 372-2 015 703 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003478165#DXA40_RS23215Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2043972
Simplified PFAM architecture for HKOC_2043972
PFAM domain coverage: 161 / 443 aa (36.3%)
1 aa443 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[231-290] | HATPase_c[338-438]
- Domain count: 2
- Matched identifier: HKOC_2043972
- Positioned domains: HisKA 231-290 ; HATPase_c 338-438
Cluster members and taxonomy
Representative gene: GCF_003478165#DXA40_RS23215
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 877 528 · GCF_020509505
AssemblyASM2050950v1 · Contighaploid
Genome composition6 238 908 bp · 46,5% GCBlautia sp. RD014232
Signal transduction countsGenes 262 · HK 135 · RR 124CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key